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Applications installed as modules

Total number of applications: 3566, with 1 to 20 versions each (2026-08-21 15:33)

A

[167 modules]

Modulename Versions
abaqus R2020x, V6R2017x, V6R2019x, V6R2023a, V6R2023x
abc 2.2.2
abc.data 1.1
abe 5.1.2
abind 1.4-8
Abseil 20230125.2, 20230125.3, 20240116.1, 20240722.0, 20250512.1
absl-py 1.4.0, 2.1.0, 2.1.0
acepack 1.6.3
ACTC 1.1
adabag 5.1
ade4 1.7-23
ADGofTest 0.3
admisc 0.38, 0.39
AdmixTools 7.0.2
AdmixTools2 2.0.1
affine 2.4.0
affxparser 1.82.0
affy 1.88.0
affycoretools 1.82.0
affyio 1.80.0
AFNI 24.0.02
aggregation 1.0.1
AgiMicroRna 2.60.0
agricolae 1.3-7
AICcmodavg 2.3-4
aiobotocore 2.15.2
aiohappyeyeballs 2.4.3
aiohttp 3.10.10, 3.10.10, 3.8.5, 3.8.5, 3.9.5
aioitertools 0.12.0
aiosignal 1.3.1
akima 0.6-3.6
alabama 2023.1.0
alabaster 1.0.0
ALDEx2 1.42.0
AlgDesign 1.2.1.2
Algorithm::Dependency 1.112
Algorithm::Diff 1.201
aliased 0.34
Alien::Base 2.83
Alien::Build::Plugin::Download::GitLab 0.01
Alien::Libxml2 0.19
ALL 1.52.0
alleleCounter 4.2.1
alluvial 0.1-2
AlphaFold 2.3.2, 2.3.2-CUDA-12.1.1, 2.3.4-foss-2022a-CUDA-11.7.0-ColabFold
alphafold 3.0.0
alsa-lib 1.2.11
AMAPVox 2.2.1
Amber 22.0-AmberTools-22.3, 22.4-AmberTools-22.5-CUDA-11.7.0
AmberTools 22.3
Amelia 1.8.3
Anaconda3 2022.05, 2023.03-1, 2023.07-2, 2023.09-0, 2024.02-1, 2024.06-1
ANCOMBC 2.12.0
animation 2.8
annaffy 1.82.0
anndata 0.10.5.post1, 0.10.5.post1
annotate 1.88.0
annotated_types 0.6.0, 0.7.0
AnnotationDbi 1.72.0
AnnotationFilter 1.34.0
AnnotationForge 1.52.0
AnnotationHub 4.0.0
ANNOVAR 20250302
ANSYS 2023R1, 2025R2
ansys 20.1
ant 1.10.12-Java-11, 1.10.15-Java-21, 1.10.9-Java-11
ANTLR 2.7.7-Java-11
ANTs 2.3.5, 2.5.0
AnyEvent 7.17
anyio 4.3.0, 4.4.0
anytime 0.3.12
AOCC 4.0.0
AOCL-BLAS 5.0, 5.1
aod 1.3.3
apcluster 1.4.14
ape 5.8-1
apipkg 3.0.2
aplot 0.2.9
App::Cmd 0.336, 0.337
App::cpanminus 1.7048
AppConfig 1.71
appdirs 1.4.4
APR 1.7.0
APR-util 1.6.1
Archive-Zip 1.68
Archive::Extract 0.88
archspec 0.1.2, 0.1.3, 0.2.2
argon2-cffi-bindings 21.2.0
argon2_cffi 23.1.0
argparse 2.3.1
argparse-dataclass 2.0.0
aricode 1.0.3
arm 1.14-4
arm_forge 22.1
Armadillo 11.4.3, 12.6.2, 12.8.0, 14.0.3, 14.6.0, 15.0.1
aroma.affymetrix 3.2.3
aroma.apd 0.7.1
aroma.core 3.3.2
aroma.light 3.40.0
arpack-ng 3.8.0, 3.9.0, 3.9.1
Array::Transpose 0.06, 0.07
Array::Utils 0.5
array_api_compat 1.4.1
arrayhelpers 1.1-0
Arriba 2.4.0
Arrow 11.0.0, 14.0.1, 17.0.0, 22.0.0, 6.0.0, 6.0.1, 8.0.0
arrow-R 14.0.1-R-4.3.2, 14.0.1-R-4.4.1, 22.0.0-R-4.5.2, 8.0.0-R-4.2.1
ASCAT 3.2.0-R-4.5.2
ASE 3.22.1, 3.23.0, 3.25.0
ase 3.23.0, 3.25.0
ase-ext 20.9.0
asgiref 3.7.2
ash 1.0-15
askpass 1.2.1
asn1crypto 1.5.1
asnipe 1.1.17
assertive 0.3-6
assertive.base 0.0-9
assertive.code 0.0-4
assertive.data 0.0-3
assertive.data.uk 0.0-2
assertive.data.us 0.0-2
assertive.datetimes 0.0-3
assertive.files 0.0-2
assertive.matrices 0.0-2
assertive.models 0.0-2
assertive.numbers 0.0-2
assertive.properties 0.0-5
assertive.reflection 0.0-5
assertive.sets 0.0-3
assertive.strings 0.0-3
assertive.types 0.0-3
assertthat 0.2.1
assimp 5.3.1, 6.0.2
assorthead 1.4.0
astor 0.8.1
astropy 4.2.1, 5.2.2
asttokens 2.4.1
astunparse 1.6.3
async-lru 2.0.4
async-timeout 4.0.3
async_generator 1.10
at-spi2-atk 2.38.0
at-spi2-core 2.38.0, 2.44.1, 2.49.91, 2.50.0, 2.54.0
ATACseqQC 1.34.0
ATK 2.36.0, 2.38.0
atomicwrites 1.4.1
attmap 0.13.2
attrdict3 2.0.2
attrs 23.2.0, 25.3.0
AUC 0.3.2
AUCell 1.32.0
audio 0.1-11
audioread 3.0.1
AUGUSTUS 3.5.0
Authen::NTLM 1.09
Authen::SASL 2.1700, 2.1800
Autoconf 2.69, 2.71, 2.72
AutoLoader 5.74
Automake 1.16.2, 1.16.3, 1.16.4, 1.16.5, 1.17, 1.18, 1.18.1
Autotools 20200321, 20210128, 20210726, 20220317, 20231222, 20240712, 20250527, 20250626
av 11.0.0
Avogadro2 1.97.0-linux-x86_64
aws 2.5-6
aws.s3 0.3.22
aws.signature 0.6.0
awsMethods 1.1-1

B

[173 modules]

Modulename Versions
b3sum 1.8.5
B::COW 0.007
B::Hooks::EndOfScope 0.28
B::Lint 1.20
Babel 2.17.0
babelgene 22.9
backcall 0.2.0
backports 1.5.0
backports.entry-points-selectable 1.3.0
backports.functools-lru-cache 2.0.0
bacr 1.0.1
ballgown 2.42.0
bamtofastq 1.4.1
BamTools 2.5.2
Bandage 0.9.0
bartMachine 1.3.4.1
bartMachineJARs 1.2.1
base64 2.0.2
base64enc 0.1-3
basilisk 1.22.0
basilisk.utils 1.22.0
batchelor 1.26.0
BatchJobs 1.10
batchmeans 1.0-4
batchspawner 1.2.0-2a9eda060a875a2b65ca9521368fe052a09c3266
Battenberg 3.0.0-R-4.5.2
BayesianTools 0.1.8
BayesLogit 2.1
bayesm 3.1-6
BayesPen 1.0
bayesplot 1.14.0
bayestestR 0.17.0
baySeq 2.44.0
Bazel 3.7.2, 5.1.1, 6.1.0, 6.3.1, 6.5.0-Java-11
BB 2019.10-1
BBMap 39.19
BBmisc 1.13
bbmle 1.0.25.1
bcbio-gff 0.7.0
BCEE 1.3.2
BCFtools 1.18, 1.19, 1.21
bcl-convert 4.0.3-2el7.x86_64
bcl2fastq2 2.20.0
bcrypt 4.0.1, 4.1.3
BDgraph 2.74
bdsmatrix 1.3-7
beachmat 2.26.0
beagle-lib 3.1.2, 4.0.0, 4.0.1, 4.0.1-CUDA-12.1.1
beanplot 1.3.1
Beast 1.10.4, 1.10.4-CUDA-12.1.1, 2.6.7, 2.7.3, 2.7.7, 2.7.7-CUDA-12.1.1
BeautifulSoup 4.10.0, 4.11.1, 4.12.2, 4.12.3, 4.12.3
BEDOPS 2.4.41
BEDTools 2.30.0, 2.31.0, 2.31.1
beepr 2.0
beeswarm 0.4.0
beniget 0.4.2.post1
berryFunctions 1.22.13
betareg 3.2-4
bgen v1.2.0
BGEN-enkre 1.1.7
BH 1.87.0-1
BiasedUrn 2.0.12
bibtex 0.5.1
BIEN 1.2.7
bigD 0.3.1
BIGL 1.9.3
biglm 0.9-3
bigmemory 4.6.4
bigmemory.sri 0.1.8
bigsnpr R4.2.1, R4.3.2
BindCraft 1.1.0-CUDA-12.1.1, 1.5.1-CUDA-12.1.1
bindr 0.1.2
bindrcpp 0.2.3
binutils 2.34, 2.35, 2.36.1, 2.37, 2.38, 2.39, 2.40, 2.42, 2.44, 2.45
Bio-DB-HTS 3.01
bio3d 2.4-5
Biobase 2.70.0
BiocBaseUtils 1.12.0
BiocFileCache 3.0.0
BiocGenerics 0.56.0
BiocIO 1.20.0
BiocManager 1.30.27
BiocNeighbors 2.4.0
bioconda bio-suite-py3.10-tf, bio-suite-py3.12-torch
BiocParallel 1.44.0
BiocSingular 1.26.0
BiocStyle 2.38.0
BiocVersion 3.22.0
bioframe v0.6.4
biom 0.3.12
biom-format 2.1.14
biomaRt 2.66.0
biomformat 1.38.0
biomod2 4.2-6-2
BioPerl 1.7.8
Biopython 1.76-Python-2.7.18, 1.79, 1.81, 1.83, 1.84
Biostrings 2.78.0
biovizBase 1.58.0
biscuit v1.5.0
Bismark 0.24.1
Bison 3.5.3, 3.7.1, 3.7.6, 3.8.2
bispdep 1.0-2
bit 4.6.0
bit64 4.6.0-1
bitarray 3.3.1, 3.6.0
bitops 1.0-9
bitstring 4.3.1
black 24.10.0
BLAKE3-C 1.8.5
BLAST+ 2.13.0, 2.14.0, 2.14.1, 2.16.0
blast_databases v5
BLAT 3.7
blavaan 0.5-9
bleach 6.1.0
Blender 4.0.1-linux-x86_64-CUDA-12.1.1
blender 3.5.1, 4.0.2, 4.2.0, 4.5.3, 5.1.2
blinker 1.6.2, 1.8.2
BLIS 0.8.1, 0.9.0, 1.0, 1.1, 2.0
blme 1.0-6
blob 1.2.4
Blosc 1.21.3, 1.21.5
Blosc2 2.6.1, 2.8.0
bluster 1.20.0
BMA 3.18.20
bmp 0.3.1
bnlearn 5.1
bokeh 2.2.3, 2.4.2, 2.4.3, 3.2.1, 3.2.2, 3.4.1, 3.6.0, 3.6.0
bold 1.3.0
bookdown 0.45
boolean 0.46
Boost 1.55.0, 1.74.0, 1.76.0, 1.77.0, 1.79.0, 1.81.0, 1.82.0, 1.83.0, 1.85.0, 1.88.0
Boost.MPI 1.79.0, 1.85.0
boot 1.3-32
bootstrap 2019.6
Boruta 9.0.0
boto3 1.26.163, 1.26.37, 1.35.36, 1.35.36
botocore 1.35.36
bottleneck 1.5.0
Bowtie 1.3.0, 1.3.1
Bowtie2 2.4.5, 2.5.1, 2.5.4
brainvisa v5.1.2-virt
brew 1.0-10
brglm 0.7.3
bridgedist 0.1.3
bridgesampling 1.1-2
brio 1.1.5
brms 2.23.0
Brobdingnag 1.2-9
broom 1.0.10
broom.helpers 1.22.0
broom.mixed 0.2.9.6
Brotli 1.0.9, 1.1.0
Brunsli 0.1
BSgenome 1.78.0
BSgenome.Cfamiliaris.UCSC.canFam3 1.4.0
BSgenome.Hsapiens.UCSC.hg19 1.4.3
BSgenome.Hsapiens.UCSC.hg38 1.4.5
BSgenome.Mmusculus.UCSC.mm10 1.4.3
bslib 0.9.0
bsseq 1.46.0
bst 0.3-24
build 1.0.3, 1.0.3, 1.2.2.post1, 1.3.0, 1.3.0
buildenv default, default-CUDA-12.8.0
bumphunter 1.52.0
BUSCO 5.8.2
Business::ISBN 3.009, 3.012
Business::ISBN::Data 20241205.001, 20250801.001
BWA 0.7.17, 0.7.18, 0.7.18-GCC-12.2.0
bwa-mem2 2.2.1
bwidget 1.9.15
bx-python 0.10.0, 0.14.0, 0.14.0, 0.8.13, 0.9.0
bz2file 0.98
bzip2 1.0.8

C

[238 modules]

Modulename Versions
ca 0.71.1
CacheControl 0.13.1, 0.14.2, 0.14.3
cachelib 0.10.2, 0.13.0
cachem 1.1.0
cachetools 5.3.1, 5.5.0
cachy 0.3.0
CAGEfightR 1.30.0
CAGEr 2.16.0
Cairo 1.6-5, 1.7-0
cairo 1.16.0, 1.17.4, 1.17.8, 1.18.0, 1.18.4
calibrate 1.7.7
callr 3.7.6
CAMERA 1.66.0
Canary::Stability 2013
Capture::Tiny 0.48, 0.50
car 3.1-3
carData 3.0-5
cards 0.7.0
cardx 0.3.0
caret 7.0-1
Carp::Clan 6.08
Carp::Heavy 1.50
CASTEP 25.11
Catch2 2.13.10, 2.13.9
Category 2.76.0
catlearn 1.1
caTools 1.18.3
cattrs 23.2.3, 24.1.1
Cbc 2.10.11, 2.10.12, 2.10.5
CBPS 0.23
ccache 4.6.3
ccdata 1.36.0
CDO 2.1.1, 2.4.1, 2.4.4
celestial 1.5.8
Cellpose 2.2.2-CUDA-11.7.0
CellRanger 6.0.0, 7.1.0, 7.2.0, 9.0.0
cellranger 1.1.0
CellRanger-ARC 2.1.0
CellRanger-ATAC 2.1.0, 2.2.0
Cereal 1.3.0
Ceres-Solver 2.2.0
certifi 2023.11.17, 2025.1.31, 2025.4.26, 2025.7.14
certipy 0.1.3
cffi 1.15.1, 1.16.0, 1.17.1, 1.17.1
cfgv 3.4.0
CFITSIO 3.49, 4.2.0, 4.3.0, 4.3.1, 4.4.1, 4.6.2
CGAL 4.14.3, 5.5.2, 5.6, 6.0.1
cgdsr 1.3.0
CGHbase 1.70.0
CGHcall 2.72.0
cghFLasso 0.2-1
CGI 4.66, 4.70
Cgl 0.60.7, 0.60.8
changepoint 2.3
chardet 5.2.0
CharLS 2.4.1
charset-normalizer 3.3.2, 3.4.1, 3.4.2
charset_normalizer 3.4.1, 3.4.2
Check 0.15.2
checkmate 2.3.3
chemometrics 1.4.4
chex 0.1.86
ChIPpeakAnno 3.44.0
ChIPseeker 1.45.0
chk 0.10.0
chkptstanr 0.1.1
chromVAR 1.32.0
chron 2.3-62
cigarillo 1.0.0
circlize 0.4.16
circular 0.5-2
Clang 12.0.1, 13.0.1, 16.0.6, 16.0.6-CUDA-12.1.1, 17.0.6, 18.1.8
Clang-Python-bindings 13.0.1, 16.0.6
class 7.3-23
Class::Accessor 0.51
Class::Data::Inheritable 0.10
Class::DBI v3.0.17
Class::DBI::SQLite 0.11
Class::Inspector 1.36
Class::ISA 0.36
Class::Load 0.25
Class::Load::XS 0.10
Class::Method::Modifiers 2.15
Class::Singleton 1.6
Class::Tiny 1.008
Class::Trigger 0.15
Class::XSAccessor 1.19
classInt 0.4-11
cld2 1.2.6
cleo 2.1.0
CLHEP 2.4.4.0, 2.4.5.3, 2.4.6.2, 2.4.7.1
cli 3.6.5
click 8.1.8, 8.2.1
click-plugins 1.1.1
cligj 0.7.2
clipr 0.8.0
clisymbols 1.2.0
clock 0.7.3
Clone 0.47
Clone::Choose 0.010
cloudpickle 2.2.1, 3.1.1
Clp 1.17.10, 1.17.8, 1.17.9
clue 0.3-66
cluster 2.1.8.1
clusterGeneration 1.3.8
clusterProfiler 4.18.1
clusterRepro 0.9
clustree 0.5.1
clValid 0.7
CMake 3.12.1, 3.18.4, 3.20.1, 3.21.1, 3.22.1, 3.23.1, 3.24.3, 3.26.3, 3.27.6, 3.29.3, 3.31.3, 3.31.8, 4.0.3
cmna 1.0.5
cmprsk 2.2-12
CMSeq 1.0.4
CNEr 1.46.0
cNORM 3.5.1
CNVkit 0.9.10-R-4.4.1
cobalt 4.6.1
cobs 1.3-9-1
coda 0.19-4.1
code-server 4.92.2
codetools 0.2-20
cogapp 3.4.1, 3.6.0
coin 1.4-3
CoinUtils 2.11.10, 2.11.12, 2.11.9
colabdesign 1.1.1, 1.1.3
collapse 2.1.4
COLMAP 3.13.0, 3.8
coloc 5.2.3
colorama 0.4.6
coloredlogs 15.0.1
colorRamps 2.3.4
colorspace 2.1-2
colourpicker 1.3.0
cols4all 0.10
combinat 0.0-8
ComICS 1.0.4
comm 0.2.2
common::sense 3.75
commonmark 0.9.1, 2.0.0
ComplexHeatmap 2.26.0
ComplexUpset 1.3.3
compositions 2.0-9
CompQuadForm 1.4.4
Compress-Raw-Zlib 2.202
Compress::Raw::Bzip2 2.213
Compress::Raw::Zlib 2.213
COMSOL 6.2.0.339
comsol 6.1, 6.3, 6.4, 6.4.378
conan 1.58.0, 1.60.2
concaveman 1.2.0
conda-inject 1.3.1, 1.3.2
conditionz 0.1.0
Config::General 2.65, 2.67
Config::INI 0.029
Config::MVP 2.200013
Config::MVP::Reader::INI 2.101465
Config::Simple 4.58
Config::Tiny 2.30
ConfigArgParse 1.7
configobj 5.0.8
configr 0.3.5
configurable-http-proxy 4.5.6, 4.6.1
conflicted 1.2.0
connection-pool 0.0.3
conquer 1.3.3
ConsensusClusterPlus 1.74.0
ConsRank 2.1.5
Const::Exporter v1.2.3, v1.3.0
Const::Fast 0.014
contextlib2 21.6.0
contfrac 1.1-12
contourpy 1.2.1, 1.3.2, 1.3.3
conumee 1.44.0
Converge 5.0.2
cookiecutter 2.6.0
cooler 0.10.2, 0.9.1
CoordgenLibs 3.0.1, 3.0.2
copCAR 2.0-4
copula 1.1-6
Core/SoftwareTree Milan
corpcor 1.6.10
corrplot 0.95
covr 3.6.4
CovSel 1.2.2
covsim 1.1.0
cowplot 1.2.0
coxed 0.3.3
coxme 2.2-22
CP2K 2023.1
cp2k-input-tools 0.9.1, 0.9.1
CPAN::Meta::Check 0.018
CPAN::Meta::Requirements 2.143
CPAN::Requirements::Dynamic 0.001, 0.002
CPAN::Uploader 0.103018
CPANPLUS 0.9914, 0.9916
cpio 2.15
cplm 0.7-12.1
cpp11 0.5.2
cppy 1.1.0, 1.2.1, 1.3.1
crashtest 0.4.1
crayon 1.5.3
credentials 2.0.3
crfsuite 0.4.2
crosstalk 1.2.2
crul 1.6.0
cryolo 1.9.9
Crypt::DES 2.07
Crypt::Rijndael 1.16
cryptography 41.0.1, 41.0.5, 42.0.8, 44.0.2, 45.0.5
cSEM 0.6.1
csSAM 1.2.4
ctmle 0.1.2
cubature 2.1.4
CubeGUI 4.8, 4.8.2
CubeLib 4.6, 4.8, 4.8.1, 4.8.2, 4.9
cubelyr 1.0.2
CubeWriter 4.6, 4.8, 4.8.1, 4.8.2, 4.9
CUDA 11.1.1, 11.4.1, 11.7.0, 12.0.0, 12.1.1, 12.2.0, 12.6.0, 12.8.0
CUDA-Python 12.1.0-CUDA-12.1.1
cuda-python 12.1.0
CUDAcore 11.1.1
cuDNN 8.0.4.30-CUDA-11.1.1, 8.4.1.50-CUDA-11.7.0, 8.9.2.26-CUDA-12.1.1, 8.9.2.26-CUDA-12.2.0, 9.5.0.50-CUDA-12.6.0
CUnit 2.1-3
CuPy 13.0.0-foss-2023a-CUDA-12.1.1
cURL 7.69.1, 7.72.0, 7.76.0, 7.78.0, 7.83.0, 7.86.0, 8.0.1, 8.11.1, 8.14.1, 8.3.0, 8.7.1
curl 7.0.0
cuSPARSELt 0.6.0.6-CUDA-12.1.1
cutadapt 4.9, 5.0, 5.0, 5.1, 5.1
cuTENSOR 2.0.1.2-CUDA-12.1.1
cvAUC 1.1.4
CVST 0.2-3
CVXR 1.0-15
Cwd 3.75
Cwd::Guard 0.05
cycler 0.12.1
Cython 3.0.10, 3.0.8, 3.1.1, 3.1.2
cytolib 2.22.0
CytoML 2.22.0

D

[183 modules]

Modulename Versions
d3Network 0.5.2.1
dada2 1.38.0
dagitty 0.3-4
dask 2021.2.0, 2022.1.0, 2022.10.0, 2023.12.1, 2023.7.1, 2023.9.2, 2023.9.2, 2024.5.1, 2024.9.1, 2024.9.1
dask-jobqueue 0.8.2, 0.8.5
dask-mpi 2022.4.0
data.table 1.16.0, 1.17.8
data.tree 1.2.0
Data::Dump 1.25
Data::Dumper::Concise 2.023
Data::Grove 0.08
Data::OptList 0.114
Data::Section 0.200008
Data::Section::Simple 0.07
Data::Stag 0.14
Data::Types 0.17
Data::UUID 1.227
DataCombine 0.2.21
datawizard 1.3.0
date 1.2-42
Date::Handler 1.2
Date::Language 2.33
DateTime 1.65, 1.66
DateTime::Locale 1.44, 1.45
DateTime::TimeZone 2.63, 2.65
DateTime::Tiny 1.07, 1.08
datrie 0.8.2
dav1d 1.5.2
DB 18.1.40
DB_File 1.858
dbarts 0.9-32
DBD-mysql 4.050
DBD::CSV 0.60, 0.62
DBD::SQLite 1.76
DBI 1.2.3, 1.645, 1.647
DBIx::Admin::CreateTable 2.11
DBIx::Admin::DSNManager 2.02
DBIx::Admin::TableInfo 3.04
DBIx::ContextualFetch 1.03
DBIx::Simple 1.37
dbplyr 2.5.1
dbscan 1.2.3
DBus 1.13.18, 1.14.0, 1.15.2, 1.15.4, 1.15.8, 1.16.2
dbus-glib 0.112
dcurver 0.9.3
ddalpha 1.3.16
ddPCRclust 1.30.0
deal 1.2-42
deap 1.4.3
debugme 1.2.0
debugpy 1.8.7
DECIPHER 3.6.0
decontam 1.30.0
decorator 5.2.1
decoupleR 2.16.0
DeepLabCut 2.3.5-CUDA-11.7.0, 2.3.6-CUDA-11.7.0
deepTools 2.5.4, 3.5.2
DeepVariant 1.10.0-virt
defusedxml 0.7.1
DEGseq 1.64.0
DelayedArray 0.36.0
DelayedMatrixStats 1.32.0
deldir 2.0-4
Delly 1.1.6
DeltaLake 0.15.1
dendextend 1.19.1
DendroPy 4.5.2, 4.6.1
densEstBayes 1.0-2.2
DEoptim 2.2-8
DEoptimR 1.1-4
dep-logic 0.4.6
Deprecated 1.2.13, 1.2.14
deprecation 2.1.0
DepthProc 2.1.6
derfinder 1.44.0
derfinderHelper 1.44.0
Deriv 4.2.0
desc 1.4.3
DescTools 0.99.60
DESeq2 1.50.0
deSolve 1.40
Devel::CheckCompiler 0.07
Devel::CheckLib 1.16
Devel::Cycle 1.12
Devel::FindPerl 0.016
Devel::GlobalDestruction 0.14
Devel::OverloadInfo 0.007
Devel::Size 0.84, 0.85
Devel::StackTrace 2.05
devtools 2.4.6
DEXSeq 1.56.0
dfidx 0.2-0
dfoptim 2023.1.0
DFT-D3 3.2.0
DHARMa 0.4.7
dHSIC 2.1
diagram 1.6.5
DiagrammeR 1.0.11
DIAMOND 2.1.0, 2.1.11, 2.1.8, 2.1.9
DiceKriging 1.6.1
dichromat 2.0-0.1
diffcyt 1.30.0
diffobj 0.3.6
digest 0.6.37
Digest::HMAC 1.05
Digest::MD5::File 0.08
Digest::SHA1 2.13
dill 0.3.6, 0.3.7, 0.3.9, 0.3.9
dimRed 0.2.7
diptest 0.77-2
dir.expiry 1.18.0
directlabels 2025.6.24
DirichletMultinomial 1.52.0
DiscriMiner 0.1-29
dismo 1.3-16
Dist::CheckConflicts 0.11
Dist::Zilla 6.032, 6.033
distillery 1.2-2
distlib 0.3.9, 0.4.0
distr 2.9.7
distrEx 2.9.6
distributed 2023.9.2, 2024.9.1
distributional 0.5.0
DistributionUtils 0.6-2
distro 1.9.0
diveRsity 1.9.90
dlm 1.1-6.1
dm-haiku 0.0.12, 0.0.12-CUDA-12.1.1
dm-tree 0.1.8
DMCfun 4.0.1
DMRcaller 1.42.0
DNABarcodes 1.40.0
DNAcopy 1.84.0
dnaio 1.2.3
DO.db 2.9
doBy 4.7.0
doc2vec 0.2.0
docker 7.0.0
docopt 0.6.2, 0.7.2
docrep 0.3.2
docstring 1.0.0
docutils 0.21.2
doit 0.36.0
doMC 1.3.8
doParallel 1.0.17
dorado 0.3.1-CUDA-11.7.0, 0.5.1-CUDA-11.7.0, 0.7.1-CUDA-11.7.0, 0.7.3-CUDA-11.7.0
doRNG 1.8.6.2
DOSE 4.4.0
doSNOW 1.0.20
dotCall64 1.2
double-conversion 3.1.5, 3.2.0, 3.2.1, 3.3.0, 3.3.1
downlit 0.4.4
downloader 0.4.1
Doxygen 1.11.0, 1.14.0, 1.8.20, 1.9.1, 1.9.4, 1.9.5, 1.9.7, 1.9.8
dpath 2.1.6, 2.2.0
dpclust v2.2.8
dplyr 1.1.4
dqrng 0.4.1
dr 3.0.11
dreamerr 1.5.0
drgee 1.1.10-3
dRiftDM 0.3.1
DRIMSeq 1.38.0
DropletUtils 1.30.0
DRR 0.0.4
drugCombo 1.2.1
DSS 2.58.0
DT 0.34.0
dtangle 2.0.9
dtplyr 1.3.2
DTRreg 2.3
dtw 1.23-1
dulwich 0.21.7, 0.22.8
dummies 1.5.6
dune-core 2.8.0.post1
dune-fem 2.8.0.6
dupRadar 1.40.0
dupsifter v1.2.0
DXchange 0.1.8
dygraphs 1.1.1.6
dymola 2024x
dynamicTreeCut 1.63-1
DynDoc 1.88.0

E

[84 modules]

Modulename Versions
e1071 1.7-16
e3nn 0.3.3, 0.3.3-CUDA-11.7.0
earth 5.3.4
EasyABC 1.5.2
EasyBuild 4.5.0, 4.6.0, 4.7.0, 4.7.1, 4.7.2, 4.8.0, 4.8.1, 4.8.2, 4.9.0, 4.9.1, 4.9.2, 4.9.3, 4.9.4, 5.0.0, 5.1.0, 5.1.1, 5.1.2, 5.2.0, 5.2.1, 5.3.0
EBImage 4.52.0
ecBuild 3.8.0, 3.8.5
ecCodes 2.22.1, 2.31.0, 2.38.3
ecdsa 0.19.1
eclipse-ide 4.32.0
ECOSolveR 0.5.5
edgeR 4.8.0
editables 0.5
edlib 1.3.9.post1, 1.3.9.post1
egg 0.4.5
eido 0.2.2, 0.2.3
Eigen 3.3.8, 3.3.9, 3.4.0
elementpath 4.1.5
elfutils 0.183, 0.185, 0.187, 0.193
Elk 8.5.2
ellipse 0.5.0
ellipsis 0.3.2
elliptic 1.5-0
ELPA 2021.11.001, 2023.05.001, 2024.05.001, 2025.01.002, 2025.06.001
Email::Date::Format 1.008
emdbook 1.3.14
emmeans 1.11.2-8, 2.0.0
emoa 0.5-3
emulator 1.2-24
Encode 3.21
Encode::Locale 1.05
energy 1.7-12
ENMeval 2.0.5.2
enrichplot 1.30.0
EnsDb.Hsapiens.v75 2.99.0
EnsDb.Hsapiens.v79 2.99.0
EnsDb.Hsapiens.v86 2.99.0
ensembldb 2.34.0
entropy 1.3.2
ENVI 6.0, 6.1, 6.2
EnvStats 3.1.0
EPICS base-7.0.7
epitools 0.5-10.1
ergm 4.10.1
ergm.count 4.1.3
ergm.multi 0.3.0
Error 0.17029, 0.17030
escape 2.6.1
ESMF 8.3.0, 8.6.0
estimability 1.5.1
et_xmlfile 1.1.0, 2.0.0
etils 1.10.0
Eval::Closure 0.14
evaluate 1.0.5
EValue 4.1.4
evd 2.3-7.1
Exact 3.3
Exception::Class 1.45
exceptiongroup 1.1.1, 1.2.2, 1.3.0
execnet 2.0.2, 2.1.1
executing 2.0.1
Exonerate 2.4.0
expandvars 0.12.0
expat 2.2.9, 2.4.1, 2.4.8, 2.4.9, 2.5.0, 2.6.2, 2.6.4, 2.7.1
Expect 1.38
expecttest 0.1.3, 0.1.5, 0.2.1
ExperimentHub 3.0.0
expm 1.0-0
Exporter::Declare 0.114
Exporter::Tiny 1.006002
ExPosition 2.11.0
expsmooth 2.3
extraDistr 1.10.0
extrafont 0.20
extrafontdb 1.1
extRemes 2.2-1
ExtUtils::CBuilder 0.280236
ExtUtils::Config 0.010
ExtUtils::Constant 0.25
ExtUtils::CppGuess 0.27
ExtUtils::Helpers 0.028
ExtUtils::InstallPaths 0.014
ExtUtils::MakeMaker 7.70, 7.76
ExtUtils::ParseXS 3.51, 3.58

F

[162 modules]

Modulename Versions
FabIO 0.14.0, 2024.9.0
factoextra 1.0.7
FactoMineR 2.12
FactorCopula 0.9.3
fail 1.3
fANCOVA 0.6-1
fansi 1.0.6
farver 2.1.2
fastahack 1.0.0
fastcluster 1.3.0
fastDummies 1.7.5
fasterize 1.1.0
fastGHQuad 1.0.1
fastICA 1.2-7
fastjsonschema 2.19.1, 2.20.0, 2.21.1
fastlogranktest 0.2.1
fastmap 1.2.0
fastmatch 1.1-6
fastmatrix 0.6-6
fastp 0.23.4
FastQC 0.11.9-Java-11
fastseg 1.56.0
FastTree 2.1.11
fBasics 4041.97
fda 6.3.0
FDb.InfiniumMethylation.hg19 2.2.0
fdrtool 1.2.18
FDS 6.7.7, 6.7.9, 6.9.1
fds 1.8
feather 0.3.5
feature 1.2.15
Fennec::Lite 0.004
fermi-lite 20190320
ff 4.5.2
FFI::CheckLib 0.31
FFmpeg 4.3.1, 4.3.2, 4.4.2, 5.1.2, 6.0, 7.0.2, 7.1.1, 7.1.2
ffnvcodec 11.1.5.2, 12.0.16.0, 12.1.14.0, 12.2.72.0, 13.0.19.0
FFTW 3.3.10, 3.3.8, 3.3.9
fftw 1.0-9
FFTW.MPI 3.3.10
fftwtools 0.9-11
fgsea 1.36.0
fields 17.1
file 5.43
File::chdir 0.1011
File::CheckTree 4.42
File::Copy::Recursive 0.45
File::Copy::Recursive::Reduced 0.008
File::Find::Rule 0.34, 0.35
File::Find::Rule::Perl 1.16
File::Grep 0.02
File::HomeDir 1.006
File::Listing 6.16
File::Next 1.18
File::Path 2.18
File::pushd 1.016
File::Remove 1.61
File::ShareDir 1.118
File::ShareDir::Install 0.14
File::Slurp 9999.32
File::Slurp::Tiny 0.004
File::Slurper 0.014
File::Spec 3.75
File::Temp 0.2311
File::Which 1.27
filehash 2.4-6
filelock 1.0.3, 3.17.0, 3.18.0
filetype 1.2.0
filevercmp 20191210
fillpattern 1.0.2
FinaleMe v0.58.1
finalfit 1.1.0
findpython 0.6.1, 0.6.3, 1.0.9
Fiona 1.9.5
fishMod 0.29.2
fitdistrplus 1.2-4
fixest 0.13.2
FKSUM 1.0.1
FLAC 1.3.3, 1.3.4, 1.4.2, 1.5.0
FLANN 1.9.2
flashClust 1.01-2
Flask 2.2.2, 2.3.3, 3.0.3
flask 2.3.3, 3.0.3
Flask-Cors 4.0.0, 5.0.0
Flask-Session 0.5.0, 0.8.0
flatbuffers 1.12.0, 2.0.7, 23.1.4, 23.5.26, 24.3.25
flatbuffers-python 2.0, 23.1.4, 23.5.26, 24.3.25
Flax 0.8.4-CUDA-12.1.1
flax 0.8.4
flex 2.6.4
flexclust 1.5.0
FlexiBLAS 3.0.4, 3.2.0, 3.2.1, 3.3.1, 3.4.4, 3.4.5
flexmix 2.3-20
flextable 0.9.10
flit 3.10.1, 3.10.1, 3.12.0, 3.12.0, 3.9.0
flit-scm 1.7.0
flit_core 3.10.1, 3.12.0
flook 0.8.4
flowAI 1.40.0
flowClean 1.48.0
flowClust 3.48.0
flowCore 2.22.0
flowDensity 1.44.0
flowFP 1.68.0
flowMerge 2.58.0
flowPeaks 1.56.0
FlowSOM 2.18.0
FlowSorted.Blood.EPIC 2.14.0
FlowSorted.CordBloodCombined.450k 1.26.0
flowStats 4.22.0
flowViz 1.74.0
flowWorkspace 4.22.0
FLTK 1.3.7, 1.3.8
fma 2.5
FME 1.3.6.4
fmri 1.9.12.1
FNN 1.1.4.1
Font::TTF 1.06
fontawesome 0.5.3
fontBitstreamVera 0.1.1
fontconfig 2.13.92, 2.13.93, 2.13.94, 2.14.0, 2.14.1, 2.14.2, 2.15.0, 2.16.2, 2.17.0
fontLiberation 0.1.0
fontquiver 0.2.1
fonttools 4.53.1, 4.58.4, 4.58.5
forcats 1.0.1
FORCE 3.10.00-virt, 3.10.04-virt, 3.7.10-virt, 3.7.11-virt, 3.7.12-virt, 3.8.00-virt, 3.8.01-virt
foreach 1.5.2
forecast 8.24.0
foreign 0.8-90
formatR 1.14
Formula 1.2-5
formula.tools 1.7.1
foss 2020b, 2021a, 2021b, 2022a, 2022b, 2023a, 2023b, 2024.05, 2024a, 2025a, 2025b
fosscuda 2020b
fossil 0.4.0
fpc 2.2-13
fpp 0.5
fracdiff 1.5-3
FragPipe 20.0-Java-11
fragpipe 23.0-container, 23.1-container, 24.0-container
FRASER 2.6.0
frbs 3.2-0
freebayes 1.3.5, 1.3.7-R-4.3.2
FreeBindCraft 1.0.5
freeglut 3.2.1, 3.2.2, 3.4.0, 3.6.0
FreeImage 3.18.0
FreeSurfer 7.3.2-centos8_x86_64
freetype 2.10.3, 2.10.4, 2.11.0, 2.12.1, 2.13.0, 2.13.2, 2.13.3
fresh 0.2.2
FriBidi 1.0.10, 1.0.12, 1.0.13, 1.0.15, 1.0.16
frozenlist 1.4.0, 1.4.1
fs 1.6.6
FSL 6.0.5.1
fsom 20141119, 20151117
fsspec 2024.9.0, 2025.3.2, 2025.7.0
furrr 0.3.1
fusioncatcher v1.33
FusionInspector v2.8.0
futile.logger 1.4.3
futile.options 1.0.1
future 1.0.0, 1.67.0
future.apply 1.20.0

G

[257 modules]

Modulename Versions
gam 1.22-6
GAMESS-US 20230930-R2-gompi-2022a
gamlss 5.5-0
gamlss.data 6.0-7
gamlss.dist 6.1-1
gamlss.tr 5.1-9
gamm4 0.2-7
gap 1.6
gap.datasets 0.0.6
gapfill 0.9.6-1
gargle 1.6.0
gast 0.6.0
GATE 9.2, 9.4
GATK 4.3.0.0-Java-11, 4.5.0.0-Java-17
gaussian g09
gaussquad 1.0-3
gbm 2.2.2
gbRd 0.4.12
gc 8.2.2
gc3pie v2.68-Py3.10.4
GCC 10.2.0, 10.3.0, 11.2.0, 11.3.0, 12.2.0, 12.3.0, 13.2.0, 13.3.0, 14.2.0, 14.3.0
GCCcore 10.2.0, 10.3.0, 11.2.0, 11.3.0, 12.2.0, 12.3.0, 13.2.0, 13.3.0, 14.2.0, 14.3.0, 15.2.0, 9.3.0
gcccuda 2020b
gclus 1.3.3
gcmr 1.0.4
GConf 3.2.6
gcrma 2.82.0
GCTA 1.94.1
GDAL 2.4.4, 3.10.0, 3.11.1, 3.11.3, 3.2.1, 3.4.1, 3.5.0, 3.6.2, 3.7.1, 3.9.0
gdata 3.0.1
GDB 13.2
gdc-client 1.6.0
gdistance 1.6.5
Gdk-Pixbuf 2.40.0, 2.42.10, 2.42.11, 2.42.12, 2.42.6, 2.42.8
GDRCopy 2.1-CUDA-11.1.1, 2.3, 2.3.1, 2.4.1, 2.4.4
gdsfmt 1.46.0
gdtools 0.4.4
Geant4 10.7.1, 11.0.2, 11.1.2, 11.2.2
Geant4-data 11.1, 11.2
gee 4.13-29
geeM 0.10.1
geepack 1.3.13
geex 1.1.1
geiger 2.0.11
genefilter 1.92.0
geneLenDataBase 1.46.0
GeneNet 1.2.17
geneplotter 1.88.0
generics 0.1.4
GENESIS 2.40.0
GENIE3 1.32.0
genomation 1.42.0
GenomeInfoDb 1.46.0
GenomeInfoDbData 1.2.15
GenomicAlignments 1.46.0
GenomicFeatures 1.62.0
GenomicFiles 1.46.0
GenomicInteractions 1.44.0
GenomicRanges 1.62.0
GenomicScores 2.22.0
genoPlotR 0.8.11
GenSA 1.1.14.1
geojsonsf 2.0.3
GEOmap 2.5-11
geometries 0.2.4
geometry 0.5.2
geopandas 0.14.2
geopy 2.4.1
GEOquery 2.78.0
geoR 1.9-6
GEOS 3.10.3, 3.11.1, 3.12.0, 3.12.1, 3.12.2, 3.13.1, 3.9.1
gert 2.1.5
GET 1.0-7
getopt 1.20.4
Getopt::Long 2.58
Getopt::Long::Descriptive 0.115, 0.116
GetoptLong 1.0.5
GetOrganelle 1.7.7.1
gettext 0.21, 0.21.1, 0.22, 0.22.5, 0.24, 0.25
gfbf 2022b, 2023a, 2023b, 2024a, 2025a, 2025b
gflags 2.2.2
gfonts 0.2.0
GGally 2.4.0
ggbeeswarm 0.7.2
ggbio 1.58.0
ggcyto 1.38.0
ggdag 0.2.13
ggdendro 0.2.0
ggdist 3.3.3
ggExtra 0.11.0
ggfan 0.1.3
ggforce 0.5.0
ggformula 1.0.0
ggfun 0.2.0
ggh4x 0.3.1
ggiraph 0.9.2
ggnetwork 0.5.14
ggnewscale 0.5.2
ggpicrust2 2.5.2
ggplot2 4.0.0
ggplotify 0.1.3
ggpointdensity 0.2.0
ggprism 1.0.7
ggpubr 0.6.2
ggraph 2.2.2
ggrastr 1.0.2
ggrepel 0.9.6
ggridges 0.5.7
ggsci 4.1.0
ggseqlogo 0.2
ggsignif 0.6.4
ggstance 0.3.7
ggstats 0.11.0
ggtangle 0.0.7
ggtext 0.1.2
ggthemes 5.1.0
ggtree 4.0.1
ggvenn 0.1.19
ggvis 0.4.9
gh 1.5.0, 2.52.0
Ghostscript 10.01.2, 10.02.1, 10.03.1, 10.05.1, 9.53.3, 9.54.0, 9.56.1
giflib 5.2.1, 5.2.2
GillespieSSA 0.6.2
Git 0.42
git 2.28.0-nodocs, 2.32.0-nodocs, 2.33.1-nodocs, 2.36.0-nodocs, 2.38.1-nodocs, 2.41.0-nodocs, 2.42.0, 2.45.1, 2.49.0, 2.50.1
git-lfs 3.5.1
git2r 0.36.2
gitcreds 0.1.2
gitdb 4.0.11, 4.0.9
GitPython 3.1.27, 3.1.27, 3.1.31, 3.1.40, 3.1.42, 3.1.42, 3.1.43, 3.1.43
GJRM 0.2-6.8
GKlib-METIS 5.1.1
GL2PS 1.4.2
GLAD 2.74.0
glasso 1.11
gld 2.6.8
glew 2.1.0, 2.2.0-egl
GLib 2.66.1, 2.68.2, 2.69.1, 2.72.1, 2.75.0, 2.77.1, 2.78.1, 2.80.4, 2.85.1, 2.85.3
GLibmm 2.66.4
Glimma 2.20.0
GLIMPSE 2.0.0
glimpse v2.0.0
gllvm 2.0.5
GLM 0.9.9.8
glmmML 1.1.7
glmmTMB 1.1.13
glmnet 4.1-10
glob2 0.7
GlobalAncova 4.28.0
GlobalArrays 5.8, 5.8.1, 5.8.2
GlobalOptions 0.1.2
globals 0.18.0
globaltest 5.64.0
glog 0.6.0, 0.7.1
GLPK 5.0
glslang-SPIRV 15.3.0, 15.4.0
glue 1.8.0
GMAP-GSNAP 2023-02-17
gmm 1.9-1
gmodels 2.19.1
GMP 6.2.0, 6.2.1, 6.3.0
gmp 0.7-5
gmpy2 2.1.2, 2.1.5, 2.2.0
gmsh 4.11.1
GMT 6.2.0
gmxapi 0.4.2
gnumeric 0.7-10
gnuplot 5.4.2, 5.4.4, 5.4.6, 5.4.8, 6.0.3
GO 0.04
Go 1.22.1, 1.25.0
GO.db 3.22.0
GO::Utils 0.15
GObject-Introspection 1.66.1, 1.68.0, 1.72.0, 1.74.0, 1.76.1, 1.78.1, 1.80.1, 1.84.0
goftest 1.2-3
goldilocks 0.4.0
gomkl 2022a, 2023b
gomms 1.0
gompi 2020b, 2021a, 2021b, 2022a, 2022b, 2023a, 2023b, 2024.05, 2024a, 2025a, 2025b
gompic 2020b
google-auth 2.22.0
google-auth-oauthlib 1.0.0
google-pasta 0.2.0
google_auth 2.35.0
googlebenchmark 1.9.4
googledrive 2.1.2
googlesheets4 1.1.2
googletest 1.11.0, 1.12.1, 1.13.0, 1.14.0, 1.15.2, 1.17.0
GOSemSim 2.36.0
goseq 1.62.0
GOstats 2.76.0
GOTCHA 1.0.8
gower 1.0.2
GPArotation 2025.3-1
GPAW 24.1.0
GPAW-setups 0.9.20000
gperf 3.1, 3.3
gperftools 2.10, 2.16, 2.17.2
gplots 3.2.0
Grace 5.1.25
Graph 0.9732, 0.9735
graph 1.88.0
Graph::ReadWrite 2.10
GraphAligner 1.0.20
Graphene 1.10.8
graphite 1.56.0
graphite2 1.3.14
graphlayouts 1.2.2
Graphviz 2.47.2, 5.0.0, 8.1.0
graphviz-python 0.20.1
Greenlet 3.0.3
grf 2.5.0
gridBase 0.4-7
gridExtra 2.3
gridGraphics 0.5-1
GRIDSS 2.13.2-Java-11
gridtext 0.1.5
grImport2 0.3-3
groff 1.22.4, 1.23.0
GROMACS 2019.4, 2021.5, 2021.5-PLUMED-2.8.0, 2022.3-nogmxapi, 2023.1, 2023.1-CUDA-11.7.0, 2023.1-nogmxapi, 2023.3, 2023.3-CUDA-11.7.0, 2024.1, 2024.4-PLUMED-2.9.2
grpcio 1.57.0, 1.57.0, 1.62.1, 1.70.0, 1.70.0
grpreg 3.5.0
GSA 1.03.3
gsalib 2.2.1
gsDesign 3.7.0
GSEABase 1.72.0
gsignal 0.3-7
GSL 2.7, 2.8
gsl 2.1-8
gsmoothr 0.1.7
gson 0.1.0
gss 2.2-9
GST-plugins-bad 1.20.2
GST-plugins-base 1.20.2
gstat 2.1-4
GStreamer 1.20.2
gsubfn 0.7
GSVA 2.4.0
gsw 1.2-0
gt 1.1.0
gtable 0.3.6
GTK+ 3.24.23
GTK2 2.24.33
GTK3 3.24.33, 3.24.37, 3.24.39, 3.24.42
GTK4 4.7.0
gtools 3.9.5
GTS 0.7.6
gtsummary 2.4.0
Gurobi 10.0.1, 11.0.0, 9.5.0
GUTS 1.2.6
Gviz 1.54.0
gviz-api 1.10.0
GWASExactHW 1.2
GWASTools 1.56.0
gWidgets2 1.0-10
gWidgets2tcltk 1.0-9
GxEScanR 2.0.2
gzip 1.10, 1.12, 1.13, 1.14

H

[95 modules]

Modulename Versions
h11 0.14.0
h2o 3.44.0.3
h5mread 1.2.0
h5py 3.1.0, 3.11.0, 3.12.1, 3.2.1, 3.6.0, 3.7.0, 3.8.0, 3.9.0
hahmmr 1.0.0
hal9001 0.4.6
haldensify 0.2.8
hardhat 1.4.2
HarfBuzz 11.2.1, 11.4.1, 2.6.7, 2.8.1, 2.8.2, 4.2.1, 5.3.1, 8.2.2, 9.0.0
harmony 1.2.4
hash 2.2.6.3
Hash::Merge 0.302
Hash::Objectify 0.008
hatch-docstring-description 1.1.1
hatch-fancy-pypi-readme 24.1.0, 25.1.0
hatch-jupyter-builder 0.9.1
hatch-requirements-txt 0.4.1
hatch-vcs 0.4.0, 0.5.0
hatch_jupyter_builder 0.9.1
hatch_nodejs_version 0.3.2
hatchling 1.18.0, 1.24.2, 1.27.0, 1.27.0
haven 2.5.5
HDF 4.2.15, 4.2.16-2, 4.3.0, 4.3.1
HDF5 1.10.7, 1.12.1, 1.12.2, 1.14.0, 1.14.3, 1.14.5, 1.14.6
HDF5Array 1.38.0
hdf5r 1.3.12
hdm 0.3.2
HDO.db 1.0.0
hdrcde 3.4
Heap 0.80
HeapDict 1.0.1
heatmap3 1.1.9
heatmaply 1.6.0
help2man 1.47.12, 1.47.16, 1.48.3, 1.49.2, 1.49.3
HepMC3 3.2.5, 3.2.6
here 1.0.2
hexbin 1.28.5
HF-Datasets 2.18.0
HGNChelper 0.8.15
hgu133plus2.db 3.13.0
HH-suite 3.3.0
HiC-Pro 3.1.0-R-4.2.1
HiCBricks 1.28.0
HiCcompare 1.32.0
HiCExplorer 3.7.5
HiCMatrix 17, 17.2
HiddenMarkov 1.8-14
highr 0.11
Highway 1.0.3, 1.0.4
hiredis 1.0.2
HISAT2 2.2.1
hishel 0.0.30
Hmisc 5.2-4
HMMcopy 1.52.0
HMMER 3.3.2, 3.4
hms 1.1.4
Hmsc 3.3-7
Homer 2024-07
Homo.sapiens 1.3.1
Hook::LexWrap 0.26
HPL 2.3
html5lib 1.1
HTML::Entities::Interpolate 1.10
HTML::Form 6.12
HTML::Parser 3.83
HTML::Tagset 3.24
HTML::Template 2.97
HTML::Tree 5.07
htmlTable 2.4.3
htmltools 0.5.8.1
htmlwidgets 1.6.4
HTSlib 1.12, 1.14, 1.15.1, 1.17, 1.18, 1.19.1, 1.21, 1.22.1
HTTP::CookieJar 0.014
HTTP::Cookies 6.11
HTTP::Daemon 6.16
HTTP::Date 6.06
HTTP::Message 7.00
HTTP::Negotiate 6.01
HTTP::Tiny 0.090
httpcode 0.3.0
httpcore 1.0.5, 1.0.6
httpuv 1.6.16
httpx 0.27.2
httr 1.4.7
httr2 1.2.1
huge 1.3.5
huggingface-hub 0.21.4, 0.24.6
humanfriendly 10.0
hunspell 3.0.6
hwloc 2.10.0, 2.11.2, 2.12.1, 2.2.0, 2.4.1, 2.5.0, 2.7.1, 2.8.0, 2.9.1, 2.9.2
hwriter 1.3.2.1
hypergeo 1.2-14
Hyperopt 0.2.7
hypothesis 4.57.1-Python-2.7.18, 5.41.2, 6.103.1, 6.13.1, 6.133.2, 6.136.6, 6.14.6, 6.46.7, 6.68.2, 6.82.0, 6.90.0
Hypre 2.20.0, 2.25.0, 2.27.0

I

[110 modules]

Modulename Versions
ica 1.0-3
iced 0.5.10
ICU 67.1, 69.1, 71.1, 72.1, 73.2, 74.1, 75.1, 76.1, 77.1
identify 2.5.35, 2.6.0
idl 8.9, 9.1
idna 3.10, 3.6
IDPmisc 1.1.21
idr 1.3
ids 1.0.1
ie2misc 0.9.2
if 0.0608
igraph 2.2.1
IGV 2.17.4-Java-17, 2.18.4-Java-17
igv-reports 1.5.1-Python-3.10.4
IHW 1.38.0
iimkl 2025b
iimpi 2021a, 2021b, 2022a, 2022b, 2023a, 2025b
IJulia 1.24.0-Julia-1.8.5
IlluminaHumanMethylation450kanno.ilmn12.hg19 0.6.1
IlluminaHumanMethylation450kmanifest 0.4.0
IlluminaHumanMethylationEPICanno.ilm10b2.hg19 0.6.0
IlluminaHumanMethylationEPICanno.ilm10b4.hg19 0.6.0
IlluminaHumanMethylationEPICmanifest 0.3.0
IlluminaHumanMethylationEPICv2anno.20a1.hg38 1.0.1
IlluminaHumanMethylationEPICv2manifest 1.0.1
illuminaio 0.52.0
Ima::DBI 0.35
image.binarization 0.1.3
imagecodecs 2022.9.26
imageio 2.13.5, 2.22.2, 2.31.1, 2.33.1
ImageMagick 7.1.0-37, 7.1.0-4, 7.1.1-15, 7.1.1-38, 7.1.1-47, 7.1.2-7
imager 1.0.5
imagerExtra 1.3.2
imagesize 1.4.1
ImageSmith 1.0
Imath 3.1.11, 3.1.12, 3.1.5, 3.1.6, 3.1.7, 3.1.9
IMB 2021.3
imbalanced-learn 0.10.1, 0.12.3
imgaug 0.4.0-CUDA-11.7.0
imkl 2020.4.304, 2021.2.0, 2021.4.0, 2022.1.0, 2022.2.1, 2023.1.0, 2023.2.0, 2025.2.0
imkl-FFTW 2021.4.0, 2022.1.0, 2022.2.1, 2023.1.0, 2025.2.0
immutabledict 4.1.0, 4.2.0, 4.2.1
immutables 0.20, 0.21
impi 2021.16.1, 2021.2.0, 2021.4.0, 2021.6.0, 2021.7.1, 2021.9.0
Import::Into 1.002005
Importer 0.026
importlib-metadata 8.7.0
importlib-resources 6.5.2
importlib_metadata 7.0.1
impute 1.84.0
imread 0.7.4
ineq 0.2-13
inflection 1.3.7
influenceR 0.1.5
infotheo 1.2.0.1
ini 0.3.1
iniconfig 2.0.0, 2.1.0
Inline 0.86, 0.87
inline 0.3.21
insight 1.4.2
installer 0.7.0
intel 2021a, 2021b, 2022a, 2022b, 2023a, 2025b
intel-compilers 2021.2.0, 2021.4.0, 2022.1.0, 2022.1.0-GCC-11.2.0, 2022.2.1, 2023.1.0, 2025.2.0
InteractionSet 1.38.0
interactiveDisplayBase 1.48.0
intergraph 2.0-4
interp 1.1-6
interpretR 0.2.5
intervals 0.15.5
intervaltree 0.1, 3.1.0
intltool 0.51.0
intreehooks 1.0
intrinsicDimension 1.2.0
inum 1.0-5
IO::Compress::Zip 2.213
IO::HTML 1.004
IO::Socket::SSL 2.089, 2.095
IO::String 1.08
IO::Stringy 2.113
IO::TieCombine 1.005
IO::Tty 1.20
ipaddress 1.0.23
IPC::Cmd 1.04
IPC::Run 20231003.0
IPC::Run3 0.049
IPC::System::Simple 1.30
ipred 0.9-15
ipykernel 6.29.5
IPython 7.18.1, 7.26.0, 8.12.0, 8.14.0, 8.17.2, 8.28.0, 8.5.0
ipython 8.28.0
ipython_genutils 0.2.0
ipywidgets 8.1.5
IQ-TREE 2.2.2.3, 2.2.2.6, 2.2.2.7, 2.3.5
irace 4.3
IRanges 2.44.0
irlba 2.3.5.1
ISA-L 2.30.0, 2.31.0
ISL 0.26
ismev 1.43
Iso 0.0-21
isoband 0.2.7
ISOcodes 2025.05.18
IsoformSwitchAnalyzeR 1.18.0-R-4.2.1
ISOweek 0.6-2
isva 1.9
iterators 1.0.14
itertools 0.1-3
ITK 5.2.1, 5.3.0
itksnap itksnap-4.2.0
itsdangerous 2.1.2, 2.2.0

J

[77 modules]

Modulename Versions
JADE 2.0-4
JAGS 4.3.0
janeaustenr 1.0.0
jaraco.classes 3.3.0, 3.4.0
jaraco.context 6.0.1
jaraco.functools 4.1.0, 4.2.1
JASPAR2020 0.99.10
JasPer 2.0.24, 2.0.28, 2.0.33, 4.0.0, 4.2.4, 4.2.5, 4.2.8
Java 1.8.0_192, 11.0.16, 11.0.20, 17.0.6, 21.0.8
jax 0.3.25-CUDA-11.7.0, 0.4.25, 0.4.25-CUDA-12.1.1
jbigkit 2.1
JBTools 0.7.2.9
jdcal 1.4.1
jedi 0.19.1, 0.19.1
jeepney 0.8.0, 0.9.0
Jellyfish 2.3.0
jemalloc 5.2.1, 5.3.0
jiebaR 0.11.1
jiebaRD 0.1
Jinja2 3.1.6
jmespath 1.0.1
jmp 0.0.4
joblib 1.3.2, 1.4.2, 1.5.1
jomo 2.7-6
jose 1.2.1
jpeg 0.1-11
jq 1.6
jquerylib 0.1.4
JSON 4.10
json-c 0.16, 0.17, 0.18
json-fortran 9.0.2
json5 0.9.25
JSON::MaybeXS 1.004008
JSON::XS 4.03
JsonCpp 1.9.4, 1.9.5
jsonify 1.2.2
jsonlite 2.0.0
jsonschema 4.21.0, 4.23.0, 4.25.0
jsonschema-specifications 2025.4.1
jsonschema_specifications 2023.12.1, 2024.10.1
jstable 1.3.19
Judy 1.0.5
juicyjuice 0.1.0
Julia 1.10.4-linux-x86_64, 1.8.5-linux-x86_64, 1.9.0-linux-x86_64, 1.9.2-linux-x86_64, 1.9.3-linux-x86_64
JUM 3.0.0
jupyter 1.1.1
Jupyter-bundle 20230823, 20240522
jupyter-core 5.7.1, 5.7.2
jupyter-lsp 2.2.5
jupyter-resource-usage 1.0.0, 1.0.2
jupyter-server 1.21.0, 2.14.0, 2.14.2, 2.7.0, 2.7.2
jupyter-server-proxy 4.0.0, 4.1.2
jupyter-telemetry 0.1.0
jupyter_client 8.6.3
jupyter_console 6.6.3
jupyter_core 5.7.2
jupyter_events 0.10.0
jupyter_packaging 0.12.3
jupyter_resource_usage 1.0.0
jupyter_server 2.14.2
jupyter_server_proxy 4.0.0
jupyter_server_terminals 0.5.3
JupyterHub 4.0.2, 4.1.5
jupyterhub 4.0.2
jupyterhub-jwtauthenticator-v2 2.0.3
jupyterhub-ldapauthenticator 1.3.2
jupyterhub-nativeauthenticator 1.2.0
jupyterhub-simplespawner 0.1
jupyterhub-systemdspawner 1.0.1
JupyterLab 2.2.8, 3.5.0, 3.5.3, 4.0.3, 4.0.5, 4.2.0, 4.2.5
jupyterlab 4.2.5
jupyterlab_pygments 0.3.0
jupyterlab_server 2.27.3
jupyterlab_widgets 3.0.13
jupyterlmod 4.0.3, 4.0.3
JupyterNotebook 7.0.2, 7.2.0
jxrlib 1.1, 2019.10.9

K

[26 modules]

Modulename Versions
kableExtra 1.4.0
KaHIP 3.14, 3.16, 3.19
Kaleido 0.2.1, 0.2.1
Kalign 3.3.5, 3.4.0
kallisto 0.48.0
kde1d 1.1.1
kedd 1.0.4
KEGGgraph 1.70.0
KEGGREST 1.50.0
keras 2.13.1, 3.9.2
kernlab 0.9-33
KernSmooth 2.23-26
keyring 24.3.0, 25.6.0
keyrings.alt 5.0.2
kim-api 2.2.1, 2.3.0
kineto 0.4.0
king 2.2.7
kinship2 1.9.6.2
kiwisolver 1.4.5, 1.4.8
klaR 1.7-3
KMC 3.2.4
knitr 1.50
KODAMA 3.0
kohonen 3.0.12
krbalancing 0.5.0b0
ks 1.15.1

L

[179 modules]

Modulename Versions
labdsv 2.1-2
labeling 0.4.3
labelled 2.16.0
laeken 0.5.3
lambda.r 1.2.4
LAME 3.100
LAMMPS 23Jun2022-kokkos, 29Aug2024-kokkos
LaplacesDemon 16.1.6
lars 1.3
lassosum 0.4.5
later 1.4.4
latex2exp 0.9.8
lattice 0.22-7
latticeExtra 0.6-31
lava 1.8.1, 1.8.2
lavaan 0.6-20
lazy 1.2-18
lazy_loader 0.3
lazyeval 0.2.2
LCFdata 2.0
lda 1.5.2
ldap3 2.9.1
ldbounds 2.0.2
LDC 1.24.0-x86_64, 1.30.0
LEA 3.22.0
leafem 0.2.5
leafgl 0.2.2
leaflegend 1.2.1
leaflet 2.2.3
leaflet.providers 2.0.0
leafsync 0.1.0
leaps 3.2
LearnBayes 2.15.1
lefser 1.20.0
legacy_api_wrap 1.4
leiden 0.4.3.1
leidenbase 0.1.35
Leptonica 1.83.0
LERC 4.0.0
lhs 1.2.0
liac-arff 2.5.0
libaec 1.0.6, 1.1.3, 1.1.4
libaio 0.3.112, 0.3.113
libaom 3.10.0
libarchive 3.4.3, 3.5.1, 3.6.1, 3.6.2, 3.7.2, 3.7.4, 3.7.7, 3.8.1
libavif 0.11.1
libcerf 1.17, 2.1, 2.3, 3.0
libclc 20.1.8
libcoin 1.0-10
libdap 3.20.11
libde265 1.0.11, 1.0.16
libdeflate 1.10, 1.15, 1.18, 1.19, 1.20, 1.24, 1.8
libdivsufsort 2.0.1
libdrm 2.4.102, 2.4.106, 2.4.107, 2.4.110, 2.4.114, 2.4.115, 2.4.117, 2.4.122, 2.4.125
libepoxy 1.5.10, 1.5.4
libevent 2.1.12
libfabric 1.11.0, 1.12.1, 1.13.2, 1.15.1, 1.16.1, 1.18.0, 1.19.0, 1.21.0, 2.0.0, 2.1.0
libfdf 0.5.1
libffi 3.2.1, 3.3, 3.4.2, 3.4.4, 3.4.5, 3.5.1
libgd 2.3.1, 2.3.3
libgeotiff 1.6.0, 1.7.0, 1.7.1, 1.7.3, 1.7.4
libgit2 1.4.3, 1.5.0, 1.7.1, 1.9.1
libGLU 9.0.1, 9.0.2, 9.0.3
libglvnd 1.3.2, 1.3.3, 1.4.0, 1.6.0, 1.7.0
libGridXC 2.0.2
libheif 1.16.2, 1.19.8, 1.20.2
libiconv 1.16, 1.17, 1.18
libidn2 2.3.2, 2.3.7, 2.3.8
Libint 2.7.2-lmax-6-cp2k
libjpeg-turbo 2.0.5, 2.0.6, 2.1.3, 2.1.4, 2.1.5.1, 3.0.1, 3.1.0, 3.1.1
libjxl 0.8.1
LibLZF 3.6
libnsl 1.3.0, 2.0.1
libogg 1.3.5, 1.3.6
libopus 1.3.1, 1.4, 1.5.2
libpciaccess 0.16, 0.17, 0.18.1
libpng 1.2.59, 1.6.37, 1.6.38, 1.6.39, 1.6.40, 1.6.43, 1.6.48, 1.6.50
libpsl 0.21.1, 0.21.5
libPSML 2.1.0
LibRaw 0.21.4
libreadline 8.0, 8.1, 8.1.2, 8.2
librosa 0.10.1, 0.10.1
libsigc++ 2.10.8
libsndfile 1.0.31, 1.1.0, 1.2.0, 1.2.2
libsodium 1.0.18, 1.0.19, 1.0.20
libspatialindex 1.9.3
libtasn1 4.19.0
LibTIFF 4.1.0, 4.2.0, 4.3.0, 4.4.0, 4.5.0, 4.6.0, 4.7.0
libtirpc 1.3.1, 1.3.2, 1.3.3, 1.3.4, 1.3.5, 1.3.6
libtommath 1.3.0
libtool 2.4.6, 2.4.7, 2.5.4
libunistring 1.0, 1.3
libunwind 1.4.0, 1.5.0, 1.6.2, 1.8.1, 1.8.2
libvdwxc 0.4.0
libvorbis 1.3.7
libvori 220621
libvpx 1.15.2
libwebp 1.1.0, 1.2.4, 1.3.1, 1.3.2, 1.4.0, 1.5.0
libxc 5.2.3, 6.2.2, 7.0.0
libxml++ 2.42.1
libxml2 2.10.3, 2.11.4, 2.11.5, 2.12.7, 2.13.4, 2.14.3, 2.9.10, 2.9.13
libxslt 1.1.34, 1.1.37, 1.1.38, 1.1.42, 1.1.43
libxsmm 1.17
libyaml 0.2.1, 0.2.5
LiCSBAS2 1.9.0
lifecycle 1.0.4
limma 3.66.0
limSolve 2.0.1
linaro_forge 23.0.3, 24.1.1
Lingua::EN::PluralToSingular 0.21
linkcomm 1.0-14
linprog 0.9-4
liquidSVM 1.2.4
List::AllUtils 0.19
List::MoreUtils 0.430
List::MoreUtils::XS 0.430
List::SomeUtils 0.59
List::UtilsBy 0.12
listenv 0.10.0, 0.9.1
lit 18.1.7, 18.1.7, 18.1.8, 18.1.8
litedown 0.7, 0.8
LittleCMS 2.12, 2.13.1, 2.14, 2.15, 2.16, 2.17
LLVM 11.0.0, 11.1.0, 12.0.1, 14.0.3, 14.0.6, 14.0.6-llvmlite, 15.0.5, 16.0.6, 18.1.8, 19.1.7, 20.1.7, 20.1.8
llvmlite 0.43.0
LMDB 0.9.24, 0.9.29, 0.9.31
lme4 1.1-37
LMERConvenienceFunctions 3.0
lmerTest 3.1-3, 3.1-3
lmom 3.2
Lmoments 1.3-2
lmtest 0.9-40
lobstr 1.1.2
local::lib 2.000029
Locale::Maketext::Simple 0.21
locfdr 1.1-8
locfit 1.5-9.12
locket 1.0.0
lockfile 0.12.2
log4r 0.4.4
Log::Dispatch 2.71
Log::Dispatch::Array 1.005
Log::Dispatchouli 3.008, 3.011
Log::Handler 0.90
Log::Log4perl 1.57
Log::Message 0.08
Log::Message::Simple 0.10
Log::Report 1.39, 1.40
Log::Report::Optional 1.07
logcondens 2.1.8
logger 0.4.1
Logger::Simple 2.0
logging 0.10-108
logistf 1.26.1
logmuse 0.2.7, 0.2.8
logspline 2.1.22
longitudinal 1.1.13
longmemo 1.1-4
longphase v2.0
loo 2.8.0
loompy 3.0.7, 3.0.7
lpSolve 5.6.23
lpsolve 5.5.2.11
lpSolveAPI 5.5.2.0-17.14
lpsymphony 1.38.0
lqa 1.0-3
lsa 0.73.3
LSD2 2.3, 2.4.1
lsei 1.3-0
lslx 0.6.11
Lua 5.4.3, 5.4.4, 5.4.6, 5.4.8
lubridate 1.9.4
lumi 2.62.0
lwgeom 0.2-14
LWP::MediaTypes 6.04
LWP::Protocol::https 6.14
LWP::Simple 6.77, 6.79
lxml 4.9.1, 4.9.2, 4.9.3, 5.3.0, 6.0.0
lz4 1.10.0, 1.9.2, 1.9.3, 1.9.4, 4.3.2, 4.3.3
LZO 2.10

M

[248 modules]

Modulename Versions
M3Drop 1.36.0
M4 1.4.18, 1.4.19, 1.4.20
MACS2 2.2.9.1
maeparser 1.3.0, 1.3.1
MAFFT 7.505-with-extensions, 7.520-with-extensions, 7.526-with-extensions
magic 1.6-1
magick 2.9.0
magma 2.6.2-CUDA-11.7.0, 2.7.2-CUDA-12.1.1
magrittr 2.0.4
Mail::Util 2.22
make 4.3, 4.4.1
makedepend 1.0.7
makedepf90 2.8.8
makeinfo 6.7-minimal, 7.0.3, 7.1
Mako 1.1.3, 1.1.4, 1.2.0, 1.2.4, 1.3.10, 1.3.10, 1.3.5, 1.3.5
MALDIquant 1.22.3
manipulateWidget 0.11.1
manta 1.6.0
mapproj 1.2.12
maps 3.4.3
maptiles 0.10.0
margin 2.3.1
MariaDB 10.9.3
Markdown 3.4.4, 3.6, 3.7
markdown 2.0
markdown-it-py 3.0.0
MarkUpSafe 3.0.2
MarkupSafe 2.1.5, 3.0.2
marray 1.88.0
maSigPro 1.82.0
MASS 7.3-65
MassSpecWavelet 1.76.0
Matching 4.10-15
MatchIt 4.7.2
Math::Bezier 0.01
Math::CDF 0.1
Math::Round 0.08
Math::Utils 1.14
Math::VecStat 0.08
Mathematica 14.0.0
mathjaxr 1.8-0
matlab 1.0.4.1, 2022a, 2023a, 2023b, 2024b, 2025b
matplotlib 2.2.5-Python-2.7.18, 3.10.3, 3.10.3, 3.10.5, 3.10.5, 3.3.3, 3.4.2, 3.4.3, 3.5.2, 3.7.0, 3.7.2, 3.8.2, 3.9.2
matplotlib-inline 0.1.6
Matrix 1.7-4, 1.7-5
matrixcalc 1.0-6
MatrixGenerics 1.22.0
MatrixModels 0.5-4
matrixStats 1.5.0
maturin 1.1.0, 1.3.1, 1.4.0-Rust-1.75.0, 1.5.0-Rust-1.76.0, 1.6.0, 1.8.3, 1.9.1
Maven 3.6.3, 3.9.7
maxLik 1.5-2.1
maxlike 0.1-12
maxnet 0.1.4
MBA 0.1-2
mboost 2.9-11
MCE::Mutex 1.900, 1.901
mclogit 0.9.6
mclust 6.1.1, 6.1.2
mcmc 0.9-8
MCMCpack 1.7-1
mcmcse 1.5-1
mctc-lib 0.3.1
mda 0.5-5
MDI 1.4.29
mdurl 0.1.2
medflex 0.6-11
mediation 4.5.1
MEDIPS 1.62.0
MEGAHIT 1.2.9
MEME 5.5.7
memisc 0.99.31.8.3
memoise 2.0.1
memuse 4.2-3
Mesa 20.2.1, 21.1.1, 21.1.7, 22.0.3, 22.2.4, 23.1.4, 23.1.9, 24.1.3, 25.1.3
MeshLab 2023.12
Meshroom 2023.3.0-CUDA-12.1.1
Meson 0.55.3, 0.58.0, 0.58.2, 0.62.1, 0.64.0, 1.1.1, 1.2.3, 1.4.0, 1.6.1, 1.8.2
meson-python 0.11.0, 0.13.2, 0.15.0, 0.16.0, 0.18.0, 0.18.0
MESS 0.6.0
Meta::Builder 0.004
MetaboCoreUtils 1.18.0
metadat 1.4-0
MetaEuk 6
metafor 4.8-0
metagenomeSeq 1.52.0
metaMA 3.1.3
metap 1.12
MetaPhlAn 4.0.6
metapod 1.18.0
metashape 2.0.1, 2.0.2, 2.1.0, 2.3.0
MetaUtility 2.1.2
methylartist 1.2.6, 1.3.0, 1.5.3, 1.5.3
methylKit 1.36.0
MethylSeekR 1.50.0
methylumi 2.56.0
METIS 5.1.0
mets 1.3.8
Mfuzz 2.70.0
mgatk 0.7.0
mgcv 1.9-3
mgltools 1.5.7
mgsub 1.7.3
mhsmm 0.4.21
mi 1.2
mia 1.18.0
mice 3.18.0
miceadds 3.18-36
microbenchmark 1.5.0
MicrobiomeStat 1.2
MIIVsem 0.5.8
mime 0.13
MIME::Base32 1.303
MIME::Base64 3.16
MIME::Charset v1.013.1
MIME::Lite 3.033
MIME::Types 2.26, 2.28
minerva 1.5.10
minfi 1.56.0
Miniforge3 24.1.2-0, 24.11.3-0, 25.3.0-3
minimap2 2.24, 2.26, 2.28, 2.29
miniprot 0.13
miniUI 0.1.2
minpack.lm 1.2-4
minqa 1.2.8
minty 0.0.5
mirai 2.5.3
mirt 1.45.1
misc3d 0.9-1
miscTools 0.6-28
missForest 1.6.1
missMDA 1.20
missMethyl 1.44.0
mistune 3.0.2
mitml 0.4-5
mitools 2.4
MiXCR 4.6.0-Java-17
Mixin::Linewise::Readers 0.111
mixOmics 6.34.0
mixsqp 0.3-54
mixtools 2.0.0.1
ml-collections 0.1.1
ml_collections 0.1.1
ml_dtypes 0.3.2, 0.5.0, 0.5.0
mlbench 2.1-6
mlegp 3.1.9
MLInterfaces 1.90.0
MLmetrics 1.1.3
mlogit 1.1-3
mlr 2.19.3
mlrMBO 1.1.5.1
mltools 0.3.5
mm-common 1.0.4
Mmg 5.6.0, 5.8.0
MMseqs2 17-b804f
mnormt 2.1.1
mock 5.2.0
Mock::Quick 1.111
modeest 2.4.0
ModelMetrics 1.2.2.2
modelr 0.1.11
modeltools 0.2-24
modin 0.32.0, 0.32.0
modkit 0.5.0, 0.6.1
modsem 1.0.13
Module::Build 0.4234
Module::Build::Tiny 0.051, 0.052
Module::Build::XSUtil 0.19
Module::CoreList 5.20241120, 5.20250720
Module::Implementation 0.09
Module::Install 1.21
Module::Load 0.36
Module::Load::Conditional 0.74
Module::Metadata 1.000038
Module::Path 0.19
Module::Pluggable 6.2, 6.3
Module::Runtime 0.016, 0.018
Module::Runtime::Conflicts 0.003
Molden 7.1
momentfit 1.0
moments 0.14.1
MonteCarlo 1.0.6
Moo 2.005005
Moose 2.2207, 2.4000
MooseX::LazyRequire 0.11
MooseX::OneArgNew 0.007
MooseX::Role::Parameterized 1.11
MooseX::SetOnce 0.203
MooseX::Types 0.50, 0.51
MooseX::Types::Perl 0.101344
more-itertools 10.2.0, 10.6.0, 10.7.0
more_itertools 10.7.0
mosaicCore 0.9.5
mosdepth 0.3.3
motif 2.3.8
MotifDb 1.52.0
motifmatchr 1.32.0
motifStack 1.54.0
Mouse v2.5.11
Mozilla::CA 20240924, 20250602
mpath 0.4-2.26
MPC 1.2.1, 1.3.1
MPFR 4.1.0, 4.2.0, 4.2.1, 4.2.2
mpi4py 3.1.4, 3.1.5, 4.0.1, 4.1.0, 4.1.0
MPICH 3.4.2
MplusAutomation 1.2
mpmath 1.3.0
MrBayes 3.2.7
mRMRe 2.1.2.2
MRO::Compat 0.15
MRtrix 3.0.3, 3.0.4
MsCoreUtils 1.21.0
MsExperiment 1.12.0
MsFeatures 1.18.0
msgpack 1.0.7, 1.1.0, 1.1.1
msgspec 0.18.6
msigdb 1.18.0
msigdbr 25.1.1
msm 1.8.2
MSnbase 2.36.0
MSstats 4.18.0
MSstatsConvert 1.20.0
MSstatsLiP 1.16.0
MSstatsPTM 2.12.0
MSstatsTMT 2.18.0
mstate 0.3.3
mstore 0.3.0
multcomp 1.4-29
multcompView 0.1-10
MultiAssayExperiment 1.36.0
multichoose 1.0.3
multicool 1.0.1
MultiDataSet 1.38.0
multidict 6.0.4, 6.1.0
multipol 1.0-9
MultiQC 1.14
multitaper 1.0-17
multtest 2.66.0
MUMPS 5.3.5-metis, 5.4.1-metis, 5.5.1-metis, 5.6.1-metis, 5.7.2-metis
munsell 0.5.1
muscat 1.24.0
MUSCLE 5.1.0
mutoss 0.1-13
mvabund 4.2.1
mvnfast 0.2.8
mvtnorm 1.3-3
mzID 1.48.0
mzR 2.44.0

N

[98 modules]

Modulename Versions
nabor 0.5.0
NADA 1.6-1.2
NAMD 2.14, 3.0-mpi, 3.0b6
namespace::autoclean 0.31
namespace::clean 0.27
namex 0.0.8
naniar 1.1.0
nanocompore 1.0.0
nanoget 1.19.3
nanomath 1.4.0, 1.4.0
nanomax-analysis-utils 0.4.4
nanonext 1.7.2
NanoPlot 1.43.0
nanopolish 0.14.0
NASM 2.15.05, 2.16.01, 2.16.03
natserv 1.0.0
natsort 8.4.0
naturalsort 0.1.3
nbclassic 1.0.0
nbclient 0.10.0
nbconvert 7.16.4
nbformat 5.10.4, 5.9.2
ncbi-vdb 3.0.2
ncbit 2013.03.29.1
NCCL 2.12.12-CUDA-11.7.0, 2.18.3-CUDA-12.1.1, 2.22.3-CUDA-12.6.0, 2.26.6-CUDA-12.8.0, 2.8.3-CUDA-11.1.1
ncdf4 1.24
ncdfFlow 2.56.0
NCmisc 1.2.0
NCO 5.1.3, 5.1.9
ncurses 6.1, 6.2, 6.3, 6.4, 6.5
ncview 2.1.8
nest_asyncio 1.6.0
Net::Domain 3.15
Net::HTTP 6.23
Net::SMTP::SSL 1.04
Net::SNMP v6.0.1
Net::SSLeay 1.94
netaddr 1.3.0
netCDF 4.7.4, 4.8.0, 4.8.1, 4.9.0, 4.9.2, 4.9.3
netCDF-C++4 4.3.1
netCDF-Fortran 4.5.3, 4.6.0, 4.6.1
netcdf4-python 1.5.5.1, 1.6.4
netifaces 0.11.0
nettle 3.10.1, 3.10.2, 3.7.3, 3.8, 3.8.1, 3.9.1
network 1.19.0
networkDynamic 0.11.5
networkLite 1.1.0
networkx 2.5, 2.6.3, 2.8.4, 3.0, 3.1, 3.2.1, 3.4.2
neuralnet 1.44.2
neuRosim 0.2-14
Nextflow 23.10.0, 24.04.2, 24.10.0, 24.10.2, 24.10.9, 25.04.7
nf-core 2.13.1, 2.13.1, 2.14.1, 2.14.1
NFFT 3.5.3
ngspatial 1.2-2
NiBabel 3.2.1, 5.3.2
nibabel 5.3.2
Nilearn 0.12.1
nilearn 0.12.1
Nim 1.6.6
Ninja 1.10.1, 1.10.2, 1.11.1, 1.12.1, 1.13.0
NISTunits 1.0.1
nleqslv 3.3.5
nlme 3.1-168
nlohmann_json 3.10.5, 3.11.2, 3.11.3, 3.12.0
NLopt 2.10.0, 2.7.0, 2.7.1
nloptr 2.2.1
NLP 0.3-2
nlsem 0.8-1
NLTK 3.8.1, 3.8.1
NMF 0.28
nnet 7.3-20
nnls 1.6
nodeenv 1.8.0, 1.9.1
nodejs 16.15.1, 18.12.1, 18.17.1, 20.13.1, 20.9.0, 22.16.0, 22.17.1
NOISeq 2.54.0
nonnest2 0.5-8
nor1mix 1.3-3
norm 1.0-11.1
nortest 1.0-4
notebook 7.0.8
notebook_shim 0.2.4
np 0.60-18
npsurv 0.5-0
NSPR 4.29, 4.30, 4.32, 4.34, 4.35, 4.36, 4.37
NSS 3.104, 3.113, 3.114, 3.57, 3.65, 3.69, 3.79, 3.85, 3.89.1, 3.94
nsync 1.25.0, 1.26.0, 1.29.2
NTSS 0.1.3
numactl 2.0.13, 2.0.14, 2.0.16, 2.0.18, 2.0.19
numba 0.56.4, 0.56.4-CUDA-11.7.0, 0.58.0, 0.58.1, 0.60.0, 0.60.0
numbat 1.5.1
Number::Compare 0.03
Number::Format 1.76
numDeriv 2016.8-1.1
numexpr 2.11.0, 2.8.1, 2.8.4
numpy 2.3.1, 2.3.2
numpy-groupies 0.10.2
numpydoc 1.8.0
NVHPC 21.11, 22.11-CUDA-11.7.0, 23.1-CUDA-12.0.0

O

[70 modules]

Modulename Versions
oai 0.4.0
oauthlib 3.2.2
Object::Accessor 0.48
Object::InsideOut 4.05
occt 7.5.0p1
oce 1.8-3
OceanView 1.0.8
oddsratio 2.0.2
officer 0.7.0
oligo 1.74.0
oligoClasses 1.72.0
ollama 0.32.14
onetimepass 1.0.1
ontologyIndex 2.12
oompaBase 3.2.10
oompaData 3.1.5
OPARI2 2.0.6, 2.0.7, 2.0.8, 2.0.9
openair 2.19.0
OpenBabel 3.1.1
OpenBLAS 0.3.12, 0.3.15, 0.3.18, 0.3.20, 0.3.20-int8, 0.3.21, 0.3.23, 0.3.24, 0.3.27, 0.3.29, 0.3.30
OpenCV 4.5.1-contrib, 4.6.0-CUDA-11.7.0-contrib, 4.6.0-contrib
openCyto 2.22.0
OpenEXR 2.5.5, 3.1.1, 3.1.5, 3.1.7, 3.2.0, 3.2.4, 3.3.4
OpenFOAM 10, 11, 12, 13, 7-20200508, 9, v2112, v2206, v2306, v2406, v2506, v2512
OpenGL 2025.09
OpenJPEG 2.4.0, 2.5.0, 2.5.2, 2.5.3
OpenMM 7.7.0-foss-2022a-CUDA-11.7.0, 8.0.0, 8.0.0-CUDA-12.1.1, 8.0.0-foss-2022a-CUDA-11.7.0
OpenMolcas 22.10
OpenMPI 4.0.5, 4.1.1, 4.1.4, 4.1.5, 4.1.6, 5.0.3, 5.0.7, 5.0.8
OpenMx 2.22.9
OpenPGM 5.2.122
OpenPNM 3.3.0
openpyxl 3.1.2, 3.1.2, 3.1.5, 3.1.5
OpenSSL 1.1, 3
openssl 2.3.4
openxlsx 4.2.8, 4.2.8.1
operator.tools 1.6.3
opt-einsum 3.3.0
opt_einsum 3.3.0, 3.4.0
opt_einsum_fx 0.1.4
Optax 0.2.2-CUDA-12.1.1
optax 0.2.2
optextras 2019-12.4
optimParallel 1.0-2
optimr 2019-12.16
optimx 2025-4.9
optmatch 0.10.8
optparse 1.7.5
optree 0.14.1
Optuna 2.10.0
orbax_checkpoint 0.5.15, 0.5.18
ORCA 5.0.3, 5.0.4, 6.0.0, 6.0.1, 6.0.1-avx2, 6.1.0-avx2
ordinal 2023.12-4.1
org.Hs.eg.db 3.22.0
org.Mm.eg.db 3.22.0
org.Rn.eg.db 3.22.0
OrganismDbi 1.52.0
origami 1.0.7
oro.nifti 0.11.4
orthopolynom 1.0-6.1
Osi 0.108.11, 0.108.8, 0.108.9
OSPRay 2.12.0
osqp 0.6.3.3
otel 0.2.0
OTF2 2.3, 3.0.2, 3.0.3, 3.1.1
outliers 0.15
OUTRIDER 1.28.0
overrides 7.7.0
OVITO 3.11.0-basic
oyaml 1.0

P

[334 modules]

Modulename Versions
p7zip 17.04
Package::Constants 0.06
Package::DeprecationManager 0.18
Package::Stash 0.40
Package::Stash::XS 0.30
packaging 23.1, 23.2, 24.2, 25.0
packrat 0.9.3
pacman 0.5.1
PadWalker 2.5
pagmo 2.19.1
pairtools v1.1.0
pamela 1.1.0
pammtools 0.7.3
pamr 1.57
pan 1.9
pandas 2.3.0, 2.3.1
pander 0.6.6
Pandoc 3.1.2
pandocfilters 1.5.1
Pango 1.47.0, 1.48.5, 1.48.8, 1.50.12, 1.50.14, 1.50.7, 1.51.0, 1.54.0, 1.56.3, 1.57.0
PAPI 7.0.0, 7.0.1, 7.1.0
parallel 20210322, 20220722, 20230722
Parallel::ForkManager 2.03
parallelDist 0.2.7
parallelly 1.45.1
parallelMap 1.5.1
parameterized 0.9.0
ParamHelpers 1.14.2
Params::Check 0.38
Params::Util 1.102
Params::Validate 1.31
Params::ValidationCompiler 0.31
ParaView 5.10.1-mpi, 5.11.1, 5.11.2, 5.13.2, 5.9.1-mpi, 6.0.1
ParaView-Catalyst 2.0.0
parent 0.243, 0.244
ParMETIS 4.0.3
Parse::RecDescent 1.967015
Parse::Yapp 1.21
parsedate 1.3.2
parso 0.8.3
partd 1.4.0, 1.4.2
party 1.3-18
partykit 1.2-24
pastecs 1.4.2
pastel 0.2.1
patchelf 0.17.2, 0.18.0
patchwork 1.3.2
Path::Tiny 0.146, 0.150
pathlib2 2.3.7.post1
pathspec 0.12.1
pathview 1.50.0
patsy 0.5.6
pbapply 1.7-4
pbivnorm 0.6.0
pbkrtest 0.5.5
pbmcapply 1.5.1
pbr 6.1.1
pbs-installer 2024.9.9
pbs_installer 2025.4.9, 2025.7.23
PBZIP2 1.1.13
PCAmatchR 0.3.3
pcaMethods 2.2.0
pcaPP 2.0-5
PCRE 8.44, 8.45
PCRE2 10.35, 10.36, 10.37, 10.40, 10.42, 10.43, 10.45
PDAL 2.8.2
PDBFixer 1.9
PDF::API2 2.047
pdiff 1.1.4
PDM 2.18.2
pdm 2.18.2
pdm_backend 2.3.3
pdp 0.8.2
PDT 3.25.1, 3.25.2
PEAR 0.9.11
PearsonDS 1.3.2
pec 2025.06.24
penalized 0.9-53
penfa 0.1.1
peperr 1.6
pephubclient 0.4.4
peppy 0.40.1, 0.40.6
performance 0.15.2
Perl 5.32.0, 5.32.0-minimal, 5.32.1, 5.32.1-minimal, 5.34.0, 5.34.1, 5.34.1-minimal, 5.36.0, 5.36.0-minimal, 5.36.1, 5.38.0, 5.38.2, 5.40.0, 5.40.2, 5.42.0
Perl-bundle-CPAN 5.36.1, 5.38.0, 5.38.2, 5.40.0, 5.40.2
Perl::OSType 1.010
Perl::PrereqScanner 1.100
PerlIO::utf8_strict 0.010
perm 1.0-0.4
PermAlgo 1.2
permute 0.9-8
PETSc 3.14.4, 3.17.4
pexpect 4.9.0
PFAM.db 3.22.0
phangorn 2.12.1
pheatmap 1.0.13
phono3py 2.7.0
phonopy 2.20.0
phylobase 0.8.12
PhyloPhlAn 3.0.3
phyloseq 1.54.0
phylowgs v1.0
PhyML 3.3.20220408
phytools 2.5-2
picard 2.25.1-Java-11
pickleshare 0.7.5
pigz 2.8
pillar 1.11.1
Pillow 10.0.0, 10.2.0, 10.4.0, 11.3.0, 8.0.1, 8.2.0, 8.3.2, 9.1.1, 9.4.0
Pillow-SIMD 10.4.0, 9.2.0, 9.5.0
pim 2.0.4
pinfsc50 1.3.0
Pint 0.23
pip 24.3.1, 25.1.1
piper 0.14.0, 0.14.2
pipestat 0.10.2, 0.8.2
pixman 0.40.0, 0.42.2, 0.43.4, 0.46.2, 0.46.4
pixmap 0.4-14
pkg-config 0.29.2
pkgbuild 1.4.8
pkgconf 1.8.0, 1.9.3, 1.9.5, 2.0.3, 2.2.0, 2.3.0, 2.4.3
pkgconfig 1.5.1-python, 1.5.4-python, 1.5.5-python, 2.0.3
pkgdown 2.1.3
pkginfo 1.12.1.2, 1.9.6
pkgload 1.4.1
pkgmaker 0.32.10
PKI 0.1-15
plac 1.4.2, 1.4.3
platformdirs 3.11.0, 4.3.6, 4.3.7, 4.3.8
PLINK 1.9b_6.21-x86_64, 2.00a2.3, 2.00a3.7
plinkliftover 0.3.0, 0.3.0
plogr 0.2.0
plot3D 1.4.2
plot3Drgl 1.0.5
plotly 4.11.0, 5.16.0
plotly.py 5.12.0, 5.16.0, 5.4.0
plotmo 3.6.4
plotrix 3.8-4
pls 2.8-5
pluggy 1.2.0, 1.5.0, 1.6.0
PLUMED 2.7.2, 2.7.3, 2.8.0, 2.9.0, 2.9.2
PLY 3.11
ply 3.11
plyr 1.8.9
plyranges 1.30.0
PMA 1.2-4
PMIx 3.1.5, 3.2.3, 4.1.0, 4.1.2, 4.2.2, 4.2.4, 4.2.6, 5.0.2, 5.0.6, 5.0.8
pmp 1.21.0
PnetCDF 1.12.2, 1.12.3, 1.13.0
png 0.1-8
pocl 1.8
Pod::Elemental 0.103006
Pod::Escapes 1.07
Pod::Eventual 0.094003
Pod::LaTeX 0.61
Pod::Man v6.0.2
Pod::Parser 1.67
Pod::Plainer 1.04
Pod::POM 2.01
Pod::Simple 3.45, 3.47
Pod::Weaver 4.020
poetry 1.5.1, 1.6.1, 1.7.1, 1.7.1, 1.8.3, 2.1.2, 2.1.2, 2.1.3, 2.1.3
poetry-core 2.1.2, 2.1.3
poetry-plugin-export 1.9.0
poetry_core 1.8.1
poetry_plugin_export 1.6.0
PoissonSeq 1.1.2
polars 0.20.2
poLCA 1.6.0.1
polspline 1.1.25
Polychrome 1.5.4
polyclip 1.10-7
polycor 0.8-1
polynom 1.4-1
pomegranate 0.15.0
pooch 1.8.2
poppler 22.01.0, 22.12.0, 23.09.0
portpicker 1.5.2
posterior 1.6.1
PostgreSQL 16.1, 16.4, 17.5
POV-Ray 3.7.0.10
poweRlaw 1.0.0
ppcor 1.1
PPI 1.279, 1.283
prabclus 2.3-4
pracma 2.4.6
praise 1.0.0
pre-commit 3.7.0, 3.8.0
predicts 0.1-19
preprocessCore 1.72.0
PresenceAbsence 1.1.11
preseqR 4.0.0
prettyGraphs 2.2.0
prettyunits 1.2.0
princurve 2.1.6
pROC 1.19.0.1
processx 3.8.6
prodigal 2.6.3
prodlim 2025.04.28
profileModel 0.6.1
proftools 0.99-3
profvis 0.4.0
progress 1.2.3
progressr 0.17.0
PROJ 7.2.1, 8.0.1, 8.1.0, 9.0.0, 9.1.1, 9.2.0, 9.3.1, 9.4.1, 9.6.2
projpred 2.9.0, 2.9.1
pRoloc 1.50.0
pRolocdata 1.48.0
pRolocGUI 2.20.0
prometheus_client 0.17.1, 0.21.0
promises 1.3.3, 1.5.0
prompt-toolkit 3.0.36
prompt_toolkit 3.0.41
propcache 0.2.0
ProtGenerics 1.42.0
proto 1.0.0
protobuf 23.0, 24.0, 25.3, 28.0, 3.14.0, 3.19.4
protobuf-python 3.19.4, 4.23.0, 4.24.0, 4.25.3, 5.28.0
proxy 0.4-27
proxyC 0.5.2
PRROC 1.4
PRRTE 3.0.11, 3.0.5, 3.0.8
PRSice 2.3.5, v2.3.5
pryr 0.1.6
ps 1.9.1
PSCBS 0.68.0
pscl 1.5.9
PSMatch 1.14.0
pspline 1.0-21
psutil 6.0.0, 6.0.0, 7.0.0, 7.0.0
psych 2.5.6
psycopg 3.1.18
psycopg2 2.9.9
ptyprocess 0.7.0
Publish 2025.07.24
pugixml 1.12.1, 1.14
PuLP 2.7.0, 2.8.0, 2.8.0, 3.1.1
pulsar 0.3.11
pure_eval 0.2.2
PureCN 2.16.0
purrr 1.1.0, 1.2.0
pvclust 2.2-0
pwalign 1.6.0
PWEALL 1.3.0.1
py 1.11.0
py-cpuinfo 9.0.0
py-expression-eval 0.3.14
py3Dmol 2.1.0, 2.1.0
PyAMG 5.0.1
pyarrow 17.0.0, 22.0.0
pyasn1 0.6.1
pyasn1-modules 0.3.0
pyasn1_modules 0.4.1
PyAV 11.0.0
pybedtools 0.9.0, 0.9.1
PyBIDS 0.21.0
pyBigWig 0.3.18, 0.3.22
pybind11 2.10.3, 2.11.1, 2.12.0, 2.13.6, 2.6.0, 2.6.2, 2.7.1, 2.7.1-Python-2.7.18, 2.9.2, 3.0.0
PyCairo 1.21.0
PyCharm 2024.1.6
pyclibrary 0.2.2
pycparser 2.22
pycryptodome 3.22.0, 3.23.0
PycURL 7.45.2, 7.45.3
pydantic 2.5.3, 2.5.3, 2.6.4, 2.6.4, 2.9.1, 2.9.1
pydantic_core 2.14.6, 2.16.3, 2.23.3
pydevtool 0.3.0
pydicom 2.2.2, 3.0.1
PyEVTK 2.0.0
pyevtk 1.6.0
pyFAI 0.21.3
pyfaidx 0.7.1, 0.7.2.1, 0.8.1.1, 0.8.1.2
pyGenomeTracks 3.8, 3.9
pygimli pg1.5.4
Pygments 2.19.1, 2.19.2
pygmo 2.19.5
pygmtsar 2024.4.17-virt
PyGObject 3.42.1
PyJWT 2.8.0
pylev 1.4.0
Pylint 3.2.5
pyls pyls
PyMOL 2.5.0
PyNaCl 1.5.0
pynndescent 0.5.11
pynvml 11.4.1
PyOpenCL 2021.2.13
PyOpenGL 3.1.6, 3.1.7
pyOpenSSL 23.2.0
pypardiso 0.4.0, 0.4.2
pyparsing 3.2.3
pyproj 3.6.0
pyproject-hooks 1.1.0
pyproject-metadata 0.7.1, 0.8.0, 0.9.1
pyproject_hooks 1.0.0, 1.1.0, 1.2.0
pyproject_metadata 0.8.0
PyQt-builder 1.15.4, 1.16.4, 1.18.1
PyQt5 5.15.10, 5.15.11, 5.15.4, 5.15.5, 5.15.7
pyqt_builder 1.18.1
PyQtGraph 0.13.3
PyRosetta 4.release-387, 4.release-387
pyrsistent 0.20.0
Pysam 0.17.0, 0.18.0, 0.19.1, 0.21.0, 0.22.0, 0.22.1, 0.23.3
PyTables 3.8.0
pytest 7.4.2, 7.4.2, 8.3.5, 8.4.1
pytest-flakefinder 1.1.0
pytest-mock 3.11.1, 3.14.0, 3.14.1
pytest-rerunfailures 12.0, 14.0, 15.0
pytest-shard 0.1.2
pytest-subtests 0.13.1
pytest-workflow 2.1.0, 2.1.0
pytest-xdist 2.5.0, 3.3.1, 3.3.1, 3.6.1, 3.8.0
Python 2.7.18, 2.7.18-bare, 3.10.4, 3.10.4-bare, 3.10.8, 3.10.8-bare, 3.11.3, 3.11.5, 3.12.3, 3.13.1, 3.13.5, 3.8.6, 3.9.5, 3.9.5-bare, 3.9.6, 3.9.6-bare
Python-bundle 3.10.4, 3.10.8
Python-bundle-PyPI 2023.06, 2023.10, 2024.06, 2025.04, 2025.07
python-crfsuite 0.9.10
python-dateutil 2.9.0.post0
Python-Deprecated 1.1.0
python-dotenv 1.0.1
python-isal 1.1.0, 1.6.1, 1.7.0
python-json-logger 2.0.7
python-lsp-server 1.12.0
python-lzo 1.15
python-slugify 8.0.4
python-xxhash 3.4.1
python-zlib-ng 0.5.1
pythran 0.18.0
pytoml 0.1.21
PyTorch 1.12.0-CUDA-11.7.0, 1.12.1-CUDA-11.7.0, 2.1.2, 2.1.2-foss-2023a-CUDA-12.1.1, 2.6.0
pytz 2025.2
PyVista 0.43.8
PyWavelets 1.1.1, 1.4.1
PyYAML 5.3.1, 5.4.1, 6.0, 6.0.1, 6.0.2
PyZMQ 24.0.1, 25.1.1, 25.1.2, 26.2.0

Q

[31 modules]

Modulename Versions
qap 0.1-2
qctool v2.2.0rel
QDNAseq 1.46.0
QFeatures 1.20.0
qgam 2.0.0
QGIS 3.30.3, 4.0.1
qgraph 1.9.8
Qhull 2020.2
qlcMatrix 0.9.9
qqconf 1.3.2
qqman 0.1.9
QRank QRank_1.0
qrng 0.0-10
qrnn 2.1.1
Qt5 5.15.10, 5.15.13, 5.15.16, 5.15.2, 5.15.5, 5.15.7
Qt6 6.6.3, 6.9.3
Qtconsole 5.3.2, 5.6.0
qtcreator 10.0.1, 14.0.1, 15.0.0
QtPy 2.2.1, 2.3.0, 2.4.1
quadprog 1.5-8, 1.5.8-R4.2.1
Qualimap 2.3-R-4.4.1
quanteda 4.3.1
quantmod 0.4.28
quantreg 6.1
quantsmooth 1.76.0
QuantumESPRESSO 7.1, 7.3.1, 7.4, 7.4.1
questionary 2.0.1
questionr 0.8.1
QuickJSR 1.8.1
qvalue 2.42.0
Qwt 6.2.0

R

[252 modules]

Modulename Versions
R 4.2.1, 4.3.2, 4.4.1, 4.5.1, 4.5.2
R-bundle-Bioconductor 3.15-R-4.2.1, 3.18-R-4.3.2, 3.18-R-4.4.1, 3.19-R-4.4.1, 3.22-R-4.5.2
R-bundle-CRAN 2023.12, 2023.12-R-4.4.1, 2025.10, 2025.11
R.cache 0.17.0
R.devices 2.17.2
R.filesets 2.15.1
R.huge 0.10.1
R.matlab 3.7.0
R.methodsS3 1.8.2
R.oo 1.27.1
R.rsp 0.46.0
R.utils 2.13.0
r2rtf 1.2.0
R2WinBUGS 2.1-23
R6 2.6.1
ragg 1.5.0
rainbow 3.8
RAMSES ramses-20240314
random 0.2.6
randomcoloR 1.1.0.1
randomForest 4.7-1.2
randomForestSRC 3.4.3
randtoolbox 2.0.5
rangeModelMetadata 0.1.5
ranger 0.17.0
RANN 2.6.2
rapidfuzz 3.13.0, 3.6.1
RapidJSON 1.1.0, 1.1.0-20230928, 1.1.0-20240815, 1.1.0-20250205
rapidjsonr 1.2.0
RAPIDS rapids-25.06
rappdirs 0.3.3
rARPACK 0.11-0
raster 3.6-32
rasterio 1.4.3, 1.4.3
rasterVis 0.51.7
ratelimitr 0.4.2
Ray 2.37.0, 2.9.1
Ray-project 2.37.0, 2.9.1
RBesT 1.8-2
RBGL 1.86.0
rbibutils 2.3
rbiom 2.2.1
rbison 1.0.0
Rborist 0.3-11
RCAL 2.0
Rcgmin 2022-4.30
RCircos 1.2.2
RcisTarget 1.29.0
rclone 1.63.1-amd64
rcmdcheck 1.4.0
RColorBrewer 1.1-3
Rcpp 1.1.0
RcppAnnoy 0.0.22
RcppArmadillo 15.0.2-2
RcppEigen 0.3.4.0.2
RcppGSL 0.3.13
RcppHNSW 0.6.0
RcppML 0.3.7
RcppParallel 5.1.11-1
RcppProgress 0.4.2
RcppRoll 0.3.1
RcppThread 2.2.0
RcppTOML 0.2.3
RcppZiggurat 0.1.8
RCurl 1.98-1.17
rda 1.2-1
Rdpack 2.6.4
rdrop2 0.8.2.1
RE2 2022-02-01, 2022-06-01, 2023-03-01, 2023-08-01, 2024-07-02, 2025-07-22
re2c 2.0.3, 2.1.1, 2.2, 3.0, 3.1, 4.2, 4.3
reactable 0.4.4
reactome.db 1.95.0
ReactomePA 1.54.0
reactR 0.6.1
readbitmap 0.1.5
reader 1.0.6
readODS 2.3.2
Readonly 2.05
readr 2.1.5
readxl 1.4.5
rebird 1.3.0
recipes 1.3.1
Redis 6.2.6, 7.2.3, 7.4.1
redis-py 5.0.1, 5.0.1, 5.1.1, 5.1.1
Ref::Util 0.204
referencing 0.32.1, 0.35.1, 0.36.2
RefFreeEWAS 2.2
refgenconf 0.12.2
refgenie 0.12.1
reformulas 0.4.1, 0.4.2
Regenie 3.1.2
regex 2023.12.25, 2024.11.6, 2024.7.24, 2025.7.31
Regexp::Common 2024080801
regioneR 1.42.0
registry 0.5-1
regsem 1.9.5
reldist 1.7-2
relsurv 2.3-3
remaCor 0.0.20
rematch 2.0.0
rematch2 2.1.2
REMORA 2.0
remotes 2.5.0
rentrez 1.2.4
renv 1.1.5
RepeatMasker 4.2.1
ReportingTools 2.50.0
reportlab 3.6.12, 4.0.0
reprex 2.1.1
requests 2.31.0, 2.32.3, 2.32.4
requests-cache 1.2.0, 1.2.1
requests-oauthlib 1.3.1
requests-toolbelt 1.0.0
reretry 0.11.8
resample 0.6
resampy 0.4.3
reshape 0.8.10
reshape2 1.4.4
ResidualMatrix 1.20.0
resolvelib 1.0.1
restfulr 0.0.16
reticulate 1.44.0
rex 1.2.1
Rfast 2.1.5.2
rfc3339_validator 0.1.4
rfc3986_validator 0.1.1
RFdiffusion 1.1.0
RFOC 3.4-10
rgbif 3.8.3
RGCCA 3.0.3
rgexf 0.16.3
rgl 1.3.24
Rglpk 0.6-5.1
Rgraphviz 2.54.0
rhandsontable 0.3.8
rhdf5 2.54.0
rhdf5filters 1.22.0
Rhdf5lib 1.32.0
RhpcBLASctl 0.23-42
Rhtslib 3.6.0
rich 10.16.2, 13.2.0, 14.0.0, 14.1.0
rich-click 1.8.8, 1.8.9
ridge 3.3
ridigbio 0.4.1
RInside 0.2.19
rio 1.2.4
riskRegression 2025.09.17
ritis 1.0.0
RItools 0.3-5
rJava 1.0-11
rjson 0.2.23
RJSONIO 2.0.0
rlang 1.1.6
rle 0.10.0
rlecuyer 0.3-8
rlemon 0.2.1
rlist 0.4.6.2
rmarkdown 2.30
RMBlast 2.14.1
rmeta 3.0
Rmpfr 1.1-2
rms 8.1-0
RMTstat 0.3.1
rmutil 1.1.10
Rnanoflann 0.0.3
RNASeqPower 1.50.0
RnBeads 2.28.0
RnBeads.hg19 1.42.0
RnBeads.hg38 1.42.1
RnBeads.mm10 2.18.0
RnBeads.mm9 1.42.0
RnBeads.rn5 1.42.0
rncl 0.8.7
rnetcarto 0.2.6
RNeXML 2.4.11
rngtools 1.5.2
rngWELL 0.10-10
RNifti 1.8.0
robustbase 0.99-6
ROC 1.86.0
ROCR 1.0-11
ROCR-Runtime 4.5.0
ROCT-Thunk-Interface 4.5.0
ROI 1.0-1
ROI.plugin.glpk 1.0-0
Role::HasMessage 0.007
Role::Identifiable::HasIdent 0.009
Role::Tiny 2.002004
roman-numerals-py 3.1.0
ROntoTools 2.38.0
Rook 1.2
ROOT 6.24.06, 6.26.06, 6.30.06
rootSolve 1.8.2.4
ropls 1.42.0
roptim 0.1.7
rotl 3.1.0
roxygen2 7.3.3
rpact 4.2.1
rpart 4.1.24
rpds-py 0.24.0, 0.26.0
rpds_py 0.17.1, 0.20.0
rpf 1.0.15
RPMG 2.2-7
RPMM 1.25
rpmrebuild 2.11
RPostgreSQL 0.7-8
rprojroot 2.1.1
RProtoBufLib 2.22.0
RPushbullet 0.3.5
rrcov 1.7-7
rredlist 1.1.1
rsa 4.9
rsample 1.3.1
Rsamtools 2.26.0
rsconnect 1.5.1, 1.6.1
RSEIS 4.2-4
RSEM 1.3.3
Rserve 1.8-15
rserver 4.4.2
RSNNS 0.4-17
Rsolnp 2.0.1
RSpectra 0.16-2
RSQLite 2.4.3
Rssa 1.1
rstan 2.32.7
rstantools 2.5.0
rstatix 0.7.3
rstudio 2024.04.0-735, 2024.04.2-764
rstudioapi 0.17.1
Rsubread 2.24.0
rsvd 1.0.5
rtdists 0.11-5
rtracklayer 1.70.0
Rtree 1.2.0
Rtsne 0.17
Rttf2pt1 1.3.14
ruamel.yaml 0.17.21, 0.17.32, 0.17.32
ruamel.yaml.base 0.3.2
ruamel.yaml.clib 0.2.7
ruamel.yaml.cmd 0.6.5
ruamel.yaml.convert 0.3.2
RUnit 0.4.33.1
Rust 1.52.1, 1.54.0, 1.56.0, 1.60.0, 1.65.0, 1.70.0, 1.73.0, 1.75.0, 1.76.0, 1.78.0, 1.83.0, 1.85.1, 1.86.0, 1.88.0, 1.91.1
ruv 0.9.7.1
rversions 2.1.2, 3.0.0
rvertnet 0.8.4
rvest 1.0.5
rvinecopulib 0.7.3.1.0
Rvmmin 2018-4.17.1
Rwave 2.6-5
RWeka 0.4-46
RWekajars 3.9.3-2

S

[355 modules]

Modulename Versions
s2 1.1.9
s3fs 2024.9.0, 2024.9.0
s3transfer 0.10.3
S4Arrays 1.10.0
S4Vectors 0.48.0
S7 0.2.0
Safe::Isa 1.000010
safestringlib 20240228
Safetensors 0.4.3, 0.4.4
safetensors 0.4.3, 0.4.4
Salmon 1.9.0
Sambamba 1.0.1
sample_pkg version
sampling 2.11
samr 3.0
SamSPECTRAL 1.64.0
SAMtools 1.14, 1.16.1, 1.17, 1.18, 1.19.2, 1.21
sandwich 3.1-1
sass 0.4.10
SBdecomp 1.2
SC3 1.38.0
ScaFaCoS 1.0.1, 1.0.4
ScaLAPACK 2.1.0, 2.1.0-fb, 2.2.0-fb, 2.2.2-fb
Scalar::Util 1.68, 1.70
Scalar::Util::Numeric 0.40
Scalasca 2.6.1, 2.6.2
ScaledMatrix 1.18.0
Scalene 1.5.26, 1.5.26
scales 1.4.0
scam 1.2-20
scandir 1.10.0
scanpy 1.9.8, 1.9.8
SCANVIS 1.24.0
scater 1.38.0
scattermore 1.2
scatterpie 0.2.6
scatterplot3d 0.3-44
scDblFinder 1.24.0
scikit-bio 0.5.7
scikit-build 0.11.1, 0.15.0, 0.17.6, 0.18.1, 0.18.1
scikit-build-core 0.10.6, 0.11.1, 0.11.5, 0.5.0, 0.9.3
scikit-image 0.18.1, 0.19.1, 0.19.3, 0.21.0, 0.22.0, 0.22.0
scikit-learn 1.0.1, 1.0.2, 1.1.2, 1.2.1, 1.3.1, 1.4.0, 1.4.2, 1.5.2, 1.5.2, 1.7.1, 1.7.1
scikit-misc 0.1.4
scikit_build_core 0.10.6, 0.11.1, 0.11.5, 0.5.0
scipy 1.16.0, 1.16.1
SciPy-bundle 2020.11, 2020.11-Python-2.7.18, 2021.05, 2021.10, 2021.10-Python-2.7.18, 2022.05, 2023.02, 2023.07, 2023.11, 2024.05, 2025.06, 2025.07
scistreer 1.2.0
SCons 4.1.0.post1, 4.2.0, 4.4.0
Scope::Guard 0.21
Score-P 8.0, 8.1, 8.4, 9.0
SCOTCH 6.1.0, 6.1.2, 7.0.1, 7.0.10, 7.0.3, 7.0.6, 7.0.8
scran 1.38.0
scrime 1.3.5
scs 3.2.7
sctransform 0.4.2, 0.4.3
scuttle 1.20.0
SDL2 2.0.20, 2.0.22, 2.26.3, 2.28.2, 2.28.5, 2.30.6, 2.32.10, 2.32.8
sdsl-lite 2.0.3
Seaborn 0.11.2, 0.12.1, 0.12.2, 0.13.2
SEACR 1.3
SecretStorage 3.3.3
seewave 2.2.4
segmented 2.1-4
selectr 0.4-2
sem 3.1-16
semantic-version 2.10.0
semPLS 1.0-10
semTools 0.5-7
Send2Trash 1.8.3
sendmailR 1.4-0
sensemakr 0.1.6
sentometrics 1.0.1
SEPP 4.5.1, 4.5.5
SeqArray 1.50.0
Seqinfo 1.0.0
seqinr 4.2-36
SeqKit 2.8.2
SeqLib 1.2.0
seqLogo 1.76.0
seqPattern 1.42.0
SeqVarTools 1.48.0
Serf 1.3.9
seriation 1.5.8
servr 0.32
session-info 1.0.0
sessioninfo 1.2.3
Set::Array 0.30
Set::IntervalTree 0.12
Set::IntSpan 1.19
Set::IntSpan::Fast 1.15
Set::Object 1.42
Set::Scalar 1.29
setRNG 2024.2-1, 2024.2-1
setuptools 64.0.3, 75.6.0, 80.9.0
setuptools-rust 1.11.0, 1.11.0, 1.6.0, 1.8.0, 1.9.0
setuptools_scm 8.1.0, 8.3.1
Seurat 4.2.0-R-4.2.1, 5.0.2, 5.1.0-R-4.3.2, 5.1.0-R-4.4.1, 5.3.1, 5.4.0, 5.4.0-R-4.5.2
SeuratObject 5.2.0, 5.4.0
sf 1.0-21, 1.1-1
sfheaders 0.4.4
sfsmisc 1.1-22
sftime 0.3.1
sgdGMF 1.0.1
shadowtext 0.1.6
shape 1.4.6.1
shapefiles 0.7.2
SHAPEIT4 4.2.2
Shapely 1.8.2, 2.0.1
Shell 0.73
shellingham 1.5.4
shiny 1.11.1
shinyBS 0.61.1
shinycssloaders 1.1.0
shinydashboard 0.7.3
shinydashboardPlus 2.0.6
shinyFiles 0.9.3
shinyhelper 0.3.2
shinyjs 2.1.0
shinypanel 0.1.5
shinystan 2.6.0
shinythemes 1.2.0
shinyWidgets 0.9.0
ShortRead 1.68.0
Siesta 5.2.2
siggenes 1.84.0
Signac 1.16.0
signal 1.8-1
SignifReg 4.3
silx 1.0.0
SimBu 1.12.0
SimDesign 2.21
simex 1.8
simona 1.8.0
simpervisor 1.0.0
Simple-DFTD3 1.2.1
simplegeneric 0.8.1
SimpleITK 2.1.1.2
simplejson 3.20.1
simplifyEnrichment 2.4.0
SimSeq 1.4.0
SimToExp 2.0
SingleCellExperiment 1.32.0
SingleR 2.12.0
SIONlib 1.7.6-tools, 1.7.7-tools
SIP 6.10.0, 6.8.1, 6.8.3
sitmo 2.0.2
six 1.16.0, 1.17.0
SKAT 2.2.5
sklearn 0.0
slam 0.1-55
SLEPc 3.17.2
slider 0.3.2
slingshot 2.18.0
slippymath 0.3.1
sm 2.2-6.0
smart-open 6.4.0, 7.1.0
smithwaterman 20160702
smmap 5.0.0, 5.0.1
smoof 1.6.0.3
smoother 1.3
smoppix 1.2.1
SMVar 1.3.4
sn 2.1.1
sna 2.8
snakemake 7.32.3, 8.27.0, 8.27.0, 8.4.2, 8.4.2
snakemake-executor-plugin-cluster-generic 1.0.7, 1.0.9
snakemake-executor-plugin-cluster-sync 0.1.3, 0.1.4
snakemake-executor-plugin-flux 0.1.0, 0.1.1
snakemake-executor-plugin-slurm 0.12.0, 0.2.1
snakemake-executor-plugin-slurm-jobstep 0.1.10, 0.2.1
snakemake-interface-common 1.15.2, 1.17.4
snakemake-interface-executor-plugins 8.2.0, 9.3.3
snakemake-interface-report-plugins 1.1.0
snakemake-interface-storage-plugins 3.0.0, 3.3.0
snappy 1.1.10, 1.1.8, 1.1.9, 1.2.1, 1.2.2
SNFtool 2.3.1
sniffio 1.3.1
Sniffles 2.4, 2.4, 2.7.1, 2.7.1
snow 0.4-4
SnowballC 0.7.1
snowballstemmer 2.2.0, 3.0.1
snowfall 1.84-6.3
snowflakeauth 0.2.0
snpEff 5.0e-Java-11
SNPRelate 1.44.0
snpStats 1.60.0
SOAR 0.99-11
SOCI 4.0.3, 4.0.3-Boost-1.83.0, 4.1.2
Socket 2.038, 2.040
Software::License 0.104006, 0.104007
SoftwareTree Milan
solrium 1.2.0
som 0.3-5.2
sortedcontainers 2.4.0
soundecology 1.3.3
soundfile 0.12.1
soupsieve 2.5
sourcetools 0.1.7-1
soxr 0.3.7
sp 2.2-0, 2.2-1
spaa 0.2.5
spacefillr 0.4.0
SpaceRanger 2.1.0
spacesXYZ 1.6-0
spacetime 1.3-3
spacexr 1.2.0-R-4.5.2
Spack 0.21.2
SPAdes 3.15.4, 4.1.0
SPAM 0.6.3.2
spam 2.11-1
spaMM 4.6.1
Spark 3.3.1
SparseArray 1.10.1
sparsehash 2.0.4
SparseM 1.84-2
sparseMatrixStats 1.22.0
sparsesvd 0.2-3
sparsevctrs 0.3.4
SPAtest 3.1.2
spatial 7.3-18
SpatialExperiment 1.20.0
SpatialPack 0.4-1
spatialreg 1.4-2
spatstat 3.4-1
spatstat.data 3.1-9
spatstat.explore 3.5-3, 3.8-0
spatstat.geom 3.6-0, 3.7-3
spatstat.linnet 3.3-2
spatstat.model 3.4-2
spatstat.random 3.4-2, 3.4-5
spatstat.sparse 3.1-0
spatstat.univar 3.1-4, 3.1-7
spatstat.utils 3.2-0, 3.2-2
spData 2.3.4
spdep 1.4-1
spdlog 1.11.0, 1.12.0
Specio 0.48, 0.51
SpectrA 1.0.1
Spectra 1.20.0
spglib 2.1.0, 2.5.0
spglib-python 2.0.0, 2.1.0, 2.5.0
Sphinx 8.2.3
sphinx-bootstrap-theme 0.8.1
sphinxcontrib-applehelp 2.0.0
sphinxcontrib-devhelp 2.0.0
sphinxcontrib-htmlhelp 2.1.0
sphinxcontrib-jsmath 1.0.1
sphinxcontrib-qthelp 2.0.0
sphinxcontrib-serializinghtml 2.0.0
sphinxcontrib-websupport 2.0.0
SPIA 2.62.0
Spiffy 0.46
spin 0.14
splancs 2.01-45
splitstackshape 1.4.8
spls 2.3-2
SPM 25.01.02
spocc 1.2.3
SPOTlight 1.14.0
spring v1.1.1
spThin 0.2.0
SQL::Abstract 2.000001
SQL::Statement 1.414
SQLAlchemy 2.0.25, 2.0.29
SQLite 3.33.0, 3.35.4, 3.36, 3.38.3, 3.39.4, 3.42.0, 3.43.1, 3.45.3, 3.47.2, 3.50.1
SQUAREM 2021.1
SRA-Toolkit 3.0.3
SSW 1.1
stable 1.1.6
stabledist 0.7-2
stabs 0.6-4
Stack 2.13.1-x86_64
stack_data 0.6.3
stageR 1.32.0
StanHeaders 2.32.10
STAR 2.7.10b, 2.7.11a, 2.7.8a, 2.7.9a
STAR-CCM+ 16.02.009-r8, 17.02.007-r8, 18.06.006-r8, 19.06.009-r8, 20.06.010-double, 21.02.008-r8
STAR-Fusion v1.13.0
stargazer 5.2.3
stars 0.6-8
startupmsg 1.0.0
statip 0.2.3
Statistics::Basic 1.6611
Statistics::Descriptive 3.0801
StatMatch 1.4.3
statmod 1.5.1
statnet 2019.6
statnet.common 4.12.0
statsmodels 0.13.1, 0.14.0, 0.14.1, 0.14.1
stdlib_list 0.10.0
stdReg 3.4.2
stopit 1.1.2
stopwords 2.3
Storable 3.25
strictures 2.000006
String::Errf 0.009
String::Flogger 1.101246
String::Formatter 1.235
String::Print 0.94
String::RewritePrefix 0.009
String::Truncate 1.100603
String::TtyLength 0.03
stringdist 0.9.15
stringi 1.8.7
stringmagic 1.2.0
stringr 1.5.2, 1.6.0
strobealign v0.14.0
strucchange 1.5-4
styler 1.11.0
Sub::Exporter 0.991
Sub::Exporter::ForMethods 0.100055
Sub::Exporter::GlobExporter 0.006
Sub::Exporter::Progressive 0.001013
Sub::Identify 0.14
Sub::Info 0.002
Sub::Install 0.929
Sub::Name 0.27, 0.28
Sub::Quote 2.006008
Sub::Uplevel 0.2800
subplex 1.9
Subread 2.0.4
subread 1.6.3-virt
subset-bam 1.1.0
Subversion 1.14.1
SuiteSparse 5.13.0-METIS-5.1.0, 5.8.1-METIS-5.1.0, 7.1.0, 7.11.0
SummarizedExperiment 1.40.0
SuperLearner 2.0-29
SuperLU 5.3.0
SuperLU_DIST 8.1.0
SuppDists 1.1-9.9
survey 4.4-8
survival 3.8-3
survivalROC 1.0.3.1
susieR 0.14.2
sva 3.58.0
svd 0.5.8
SVG 2.87
svglite 2.2.2
svMisc 1.4.3
SVT-AV1 3.1.2
svUnit 1.0.8
swagger 5.17.14.1
swan 41.42_17Oct2023, gitlab_17Jan2024_openmp, gitlab_24May2024_openmp
SWIG 4.0.2, 4.1.1, 4.2.1, 4.3.1
Switch 2.17
symmoments 1.2.1
sympy 1.10.1, 1.11.1, 1.12, 1.13.3
sys 3.4.3
Sys::Info 0.7811
Sys::Info::Base 0.7807
Sys::Info::Driver::Linux 0.7905
Sys::Info::Driver::Unknown 0.79
systemfonts 1.3.1
Szip 2.1.1

T

[203 modules]

Modulename Versions
tabixpp 1.1.0, 1.1.2
tableone 0.13.2
tabletools 0.1.0
tabulate 0.9.0
TailRank 3.2.4
Task::Weaken 1.06
tau 0.0-26
taxize 0.10.0
tbb 2020.3, 2021.10.0, 2021.11.0, 2021.13.0, 2021.5.0
tblib 2.0.0, 3.0.0
Tcl 8.6.10, 8.6.11, 8.6.12, 8.6.13, 8.6.14, 8.6.16, 9.0.1
tcltk2 1.6.1
tclust 2.1-2
tcsh 6.22.03, 6.24.01, 6.24.10, 6.24.13
TeachingDemos 2.13
TELEMAC-MASCARET 8p3r1, 8p5r0, 9.0.0
Template 3.102
Template::Plugin::Number::Format 1.06
tenacity 8.2.3
tensor 1.5.1
tensorA 0.36.2.1
tensorboard 2.13.0, 2.15.1, 2.18.0, 2.18.0
tensorboard-data-server 0.7.1
tensorboard-plugin-profile 2.13.1
tensorboard-plugin-wit 1.8.1
tensorboard_data_server 0.7.2
TensorFlow 2.11.0-CUDA-11.7.0, 2.13.0, 2.13.0, 2.15.1-foss-2023a-CUDA-12.1.1, 2.18.1, 2.18.1, 2.18.1-CUDA-12.6.0, 2.9.1-CUDA-11.7.0
tensorflow-estimator 2.13.0
tensorstore 0.1.60, 0.1.65, 0.1.65
tergm 4.2.2
Term::Encoding 0.03
Term::ReadKey 2.38
Term::ReadLine::Gnu 1.46, 1.47
Term::Table 0.023, 0.024
Term::UI 0.50
termcolor 2.3.0, 2.5.0
terminado 0.18.1
terra 1.8-70, 1.8-80
tesseract 5.3.0
Test 1.26
test-drive 0.5.0
Test2::Plugin::NoWarnings 0.10
Test2::Require::Module 1.302204, 1.302214
Test::Base 0.89
Test::CheckDeps 0.010
Test::ClassAPI 1.07
Test::CleanNamespaces 0.24
Test::Deep 1.204, 1.205
Test::Differences 0.71, 0.72
Test::Exception 0.43
Test::FailWarnings 0.008
Test::Fatal 0.017
Test::File 1.993, 1.995
Test::File::ShareDir::Dist 1.001002
Test::Harness 3.50, 3.52
Test::LeakTrace 0.17
Test::Memory::Cycle 1.06
Test::More::UTF8 0.05
Test::Most 0.38
Test::Needs 0.002010
Test::NoWarnings 1.06
Test::Object 0.08
Test::Output 1.034, 1.036
Test::Pod 1.52
Test::Requires 0.11
Test::RequiresInternet 0.05
Test::Simple 1.302204, 1.302214
Test::SubCalls 1.10
Test::Sys::Info 0.23
Test::Version 2.09
Test::Warn 0.37
Test::Warnings 0.033, 0.038
Test::Without::Module 0.23
Test::YAML 1.07
testit 0.13
testthat 3.2.3
TEtranscripts 2.2.0, 2.2.3
texlive 20220321, 20230313
texreg 1.39.4
text-unidecode 1.3
Text::Aligner 0.16
Text::Balanced 2.06
Text::CSV 2.04, 2.06
Text::CSV_XS 1.57, 1.61
Text::Diff 1.45
Text::Format 0.63
Text::Glob 0.11
Text::Iconv 1.7
Text::ParseWords 3.31
Text::Soundex 3.05
Text::Table 1.135
Text::Table::Manifold 1.03
Text::Template 1.61
textcat 1.0-9
textplot 0.2.2
textshaping 1.0.3, 1.0.4
textual 0.54.0, 0.79.1
TFBSTools 1.48.0
TFisher 0.2.0
TFMPvalue 0.0.9
TH.data 1.1-4
threadpoolctl 3.6.0
threejs 0.3.4
throttler 1.2.2
Throwable 1.001
tibble 3.3.0
tictoc 1.2.1
tidybayes 3.0.7
tidygraph 1.3.1
tidyr 1.3.1
tidyselect 1.2.1
tidytext 0.4.3
tidytree 0.4.6
tidyverse 2.0.0
Tie::Function 0.02
Tie::IxHash 1.23
tiff 0.1-12
tifffile 2023.7.18
tiktoken 0.7.0
Time::Local 1.35
Time::Piece 1.3401, 1.36
Time::Piece::MySQL 0.06
timechange 0.3.0
timeDate 4051.111
timereg 2.0.7
timeSeries 4041.111
tinycss2 1.3.0
tinytex 0.57
Tk 8.6.10, 8.6.11, 8.6.12, 8.6.13, 8.6.14, 8.6.16, 9.0.1
Tkinter 2.7.18, 3.10.4, 3.10.8, 3.11.3, 3.11.5, 3.12.3, 3.13.1, 3.13.5, 3.8.6, 3.9.5, 3.9.6
tkrplot 0.0-30
tkWidgets 1.88.0
tldr 1.2.2
tlparse 0.3.37
tm 0.7-16
tmap 4.2
tmaptools 3.3
TMB 1.9.18
tmle 2.1.1
tmvnsim 1.0-2
tmvtnorm 1.7
Togl 2.0
tokenizers 0.15.2, 0.15.2, 0.19.1, 0.19.1, 0.3.0
toml 0.10.2
TOML-Fortran 0.4.2
tomli 2.2.1
tomli-w 1.2.0
tomlkit 0.12.3, 0.13.2, 0.13.3
TomoPy 1.11.0
toolz 0.12.0, 0.12.1
topicmodels 0.2-17
toposort 1.10
torchvision 0.16.0, 0.21.0, 0.21.0
tornado 6.3.2, 6.4, 6.4.1
tqdm 4.61.2, 4.62.3, 4.64.0, 4.66.1, 4.66.2, 4.66.5, 4.67.1
traitlets 5.13.0
TrajectoryUtils 1.18.0
TraMineR 2.2-12
Transformers 4.39.3, 4.44.0
transformers 4.39.3, 4.44.0
transitions 0.9.2
tree 1.0-45
Tree::DAG_Node 1.32, 1.35
treeio 1.34.0
TreeSummarizedExperiment 2.18.0
TRF 4.09.1
triebeard 0.4.1
trimAl 1.4.1
trimcluster 0.2-0
Trimmomatic 0.39-Java-11
Trinity 2.15.1
tripack 1.3-9.3
TRIQS 3.1.1, 3.2.0
TRIQS-cthyb 3.2.1
TRIQS-tprf 3.2.1
trogon 0.5.0
trove-classifiers 2025.2.18.16, 2025.5.9.12
TruncatedNormal 2.3
truncnorm 1.0-9
trust 0.1-8
truststore 0.9.2
Try::Tiny 0.32
tseries 0.10-58
tseriesChaos 0.1-13.1
tsna 0.3.6
tsne 0.1-3.1
TSP 1.2-5
TTR 0.24.4
tuneR 1.4.7
twang 2.6.1
tweedie 2.3.5
tweenr 2.0.3
TxDb.Hsapiens.UCSC.hg19.knownGene 3.22.1
TxDb.Mmusculus.UCSC.mm10.knownGene 3.10.0
txdbmaker 1.6.0
tximport 1.38.0
Type::Tiny 2.006000, 2.008002
typer 0.12.5, 0.4.1
Types::Serialiser 1.01
typing-extensions 3.7.4.3, 4.10.0, 4.11.0, 4.12.2, 4.14.1, 4.9.0
typing_extensions 4.12.2, 4.14.0, 4.4.0
tzdata 2025.2
tzdb 0.5.0

U

[44 modules]

Modulename Versions
ubiquerg 0.7.0, 0.8.0
UCC 1.0.0, 1.1.0, 1.2.0, 1.3.0, 1.4.4
UCC-CUDA 1.3.0-CUDA-12.8.0
UCell 2.14.0
ucminf 1.2.2
UCSC.utils 1.6.0
UCX 1.10.0, 1.11.2, 1.12.1, 1.13.1, 1.14.1, 1.15.0, 1.16.0, 1.18.0, 1.19.0, 1.9.0, 1.9.0-CUDA-11.1.1
UCX-CUDA 1.11.2-CUDA-11.4.1, 1.12.1-CUDA-11.7.0, 1.14.1-CUDA-12.1.1, 1.16.0-CUDA-12.6.0, 1.18.0-CUDA-12.8.0
udpipe 0.8.12
UDUNITS 2.2.28
ujson 5.10.0
umap 0.2.10.0
umap-learn 0.5.5, 0.5.5
unbalanced 2.0
unearth 0.17.2
Unicode::EastAsianWidth 12.0
Unicode::LineBreak 2019.001
Unidecode 1.3.6
unidist 0.7.2
unifdef 2.12
unikn 1.0.0
uniqueAtomMat 0.1-3-2
units 1.0-0
unittest-xml-reporting 3.1.0
UNIVERSAL::moniker 0.08
universalmotif 1.28.0
Unix::Processors 2.046
unmarked 1.5.1
UnZip 6.0
UpSetR 1.4.0
urca 1.3-4
URI 5.31, 5.32
url-normalize 1.4.3
urlchecker 1.0.1
urllib3 2.1.0, 2.4.0, 2.5.0
urltools 1.7.3.1
uroot 2.1-3
USEARCH 11.0.667-i86linux32
usethis 3.2.1
utf8 1.2.6
utf8proc 2.10.0, 2.6.1, 2.7.0, 2.8.0, 2.9.0
util-linux 2.36, 2.37, 2.38, 2.38.1, 2.39, 2.40, 2.41
uuid 1.2-1
uwot 0.2.3, 0.2.4

V

[40 modules]

Modulename Versions
V8 8.0.1
Valgrind 3.20.0, 3.25.1, 3.26.0
varhandle 2.0.6
Variable::Magic 0.64
variancePartition 1.40.0
VariantAnnotation 1.56.0
VarScan 2.4.4-Java-11
VASP 5.4.4_pl2, 6.3.0, 6.5.1
VBZ-Compression 1.0.3
vcd 1.4-13
vcflib 1.0.2, 1.0.9-R-4.3.2
vcfR 1.15.0
VCFtools 0.1.16
vctrs 0.6.5
vegan 2.7-2
velocyto 0.17.17, 0.17.17
Velvet 1.2.10-mt-kmer_191
venn 1.12
VennDiagram 1.7.3
VEP 107
version 0.9933
versioneer 0.29
versioningit 3.1.2
VGAM 1.1-13
VIM 6.2.6
VineCopula 2.6.1
vioplot 0.5.1
vipor 0.4.7
viridis 0.6.5
viridisLite 0.4.2
virtualenv 20.23.1, 20.24.6, 20.26.2, 20.29.2, 20.29.2, 20.32.0, 20.32.0
visdat 0.6.0
visNetwork 2.1.4
VMD 1.9.4a57
Voro++ 0.4.6
vroom 1.6.6
VSCode 1.104.1, 1.92.2, 1.96.4, 1.97.1
vsn 3.78.0
VSURF 1.2.1
VTK 9.0.1, 9.1.0, 9.2.2, 9.2.6, 9.3.0

W

[51 modules]

Modulename Versions
waiter 0.2.5.1
waldo 0.6.2
Wannier90 3.1.0
Want 0.29
warp 0.2.1
wateRmelon 2.16.0
waveslim 1.8.5
Wayland 1.20.0, 1.22.0, 1.23.0, 1.23.92, 1.24.0
WCSim 1.6-virt
wcwidth 0.2.13
wdm 0.2.6
webencodings 0.5.1
webshot 0.5.5
websocket-client 1.5.1
websocket_client 1.8.0
webutils 1.2.2
weights 1.1.2
WeightSVM 1.7-16
wellknown 0.7.4
Werkzeug 2.3.7, 3.1.3
werkzeug 2.3.7, 3.0.4
WFA2 2.3.4
wgbs_tools v0.2.2
WGCNA 1.73
wget 1.24.5
WhatsHap 2.2, 2.6
whatshap 2.2, 2.6
wheel 0.45.1
whisker 0.4.1
Whisper 1.3.0
Whisper-gui 0.1.0
widgetframe 0.3.1
widgetsnbextension 4.0.13
widgetTools 1.88.0
WikidataQueryServiceR 1.0.0
WikidataR 2.3.3
WikipediR 1.7.1
wikitaxa 0.4.0
withr 3.0.2
wk 0.9.4
word2vec 0.4.0
wordcloud 2.6
worrms 0.4.3
wrapt 1.15.0, 1.15.0, 1.16.0, 1.16.0
Wrench 1.28.0
writexl 1.5.4
WriteXLS 6.8.0
wtdbg2 2.5
wurlitzer 3.1.1
WWW::RobotRules 6.02
wxWidgets 3.2.1

X

[56 modules]

Modulename Versions
X11 20201008, 20210518, 20210802, 20220504, 20221110, 20230603, 20231019, 20240607, 20250521, 20250608
x264 20201026, 20210414, 20210613, 20220620, 20230226, 20231019, 20240513, 20250619, 20250831
x265 3.3, 3.5, 3.6, 4.1
xarray 2022.9.0, 2023.9.0
XBeach 20230831, 20231031
XBRL 0.99.19.1
xcms 4.8.0
XCrySDen 1.6.2
Xerces-C++ 3.2.4, 3.2.5, 3.3.0
xfun 0.53, 0.54
xgboost 1.7.11.1
xlrd 2.0.1, 2.0.2
xlsx 0.6.5
xlsxjars 0.9.0
XML 3.99-0.19
XML-Compile 1.63
XML-LibXML 2.0207, 2.0208, 2.0210
xml2 1.4.0, 1.4.1
XML::Bare 0.53
XML::Compile 1.63
XML::Compile::Cache 1.06
XML::Compile::SOAP 3.28
XML::Compile::WSDL11 3.08
XML::DOM 1.46
XML::Filter::BufferText 1.01
XML::LibXML 2.0210
XML::LibXML::Simple 1.01
XML::NamespaceSupport 1.12
XML::Parser 2.47
XML::RegExp 0.04
XML::SAX 1.02
XML::SAX::Base 1.09
XML::SAX::Expat 0.51
XML::SAX::Writer 0.57
XML::Simple 2.25
XML::Tiny 2.07
XML::Twig 3.52, 3.54
XML::Writer 0.900
XML::XPath 1.48
xmlf90 1.6.3
xmlschema 2.5.0
xopen 1.0.1, 1.7.0, 1.9.0, 2.0.2
xorg-macros 1.19.2, 1.19.3, 1.20.0, 1.20.1, 1.20.2
xprop 1.2.5
xproto 7.0.31
XSLoader 0.24
xtable 1.8-4
xtb 6.6.1
xTea v0.1.0-long
xts 0.14.1
XVector 0.50.0
Xvfb 1.20.13, 21.1.18, 21.1.3, 21.1.6, 21.1.8
xxd 8.2.4220, 9.0.2112, 9.1.0307
xxHash 0.8.2
xyzservices 2024.4.0
XZ 5.2.5, 5.2.7, 5.4.2, 5.4.4, 5.4.5, 5.6.3, 5.8.1

Y

[11 modules]

Modulename Versions
yacman 0.9.3
yaImpute 1.0-34.1
YAML 1.31
yaml 2.3.10
yaml-cpp 0.7.0, 0.8.0
YAML::PP v0.39.0
YAML::Tiny 1.74, 1.76
yarl 1.15.4, 1.9.2
Yasm 1.3.0
yte 1.5.4, 1.5.5
yulab.utils 0.2.1

Z

[22 modules]

Modulename Versions
Z3 4.10.2, 4.12.2, 4.13.0, 4.13.4, 4.15.1, 4.8.10, 4.8.11, 4.8.12
z3-solver 4.13.0.0
z3_solver 4.13.4.0, 4.15.1.0
zCompositions 1.5.0-5
zeallot 0.2.0
zellkonverter 1.20.0
ZeroMQ 4.3.3, 4.3.4, 4.3.5
zfp 1.0.0
zict 3.0.0
zigg 0.0.2
Zip 3.0
zip 2.3.3
zipfile36 0.1.3
zipp 3.17.0, 3.21.0, 3.23.0
zlib 1.2.11, 1.2.12, 1.2.13, 1.3.1, 2.3.2
zlib-ng 0.4.1, 0.5.0, 2.0.7, 2.2.1
Zoltan 3.901
zoo 1.8-14
Zopfli 1.0.3
zstandard 0.22.0, 0.23.0
zstd 1.4.5, 1.4.9, 1.5.0, 1.5.2, 1.5.5, 1.5.6, 1.5.7, 1.5.7
zUMIs 2.9.7-R-4.3.2

Last updated: 2026-08-21 15:33